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Strain identifier

BacDive ID: 159562

Type strain: Yes

Species: Xanthomonas dyei

Strain history: <- CFBP <- ICMP <- J. M. Young

NCBI tax ID(s): 743699 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 66388

BacDive-ID: 159562

DSM-Number: 110537

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, plant pathogen

description: Xanthomonas dyei DSM 110537 is a mesophilic plant pathogen that was isolated from Metrosideros excelsa Sol. Ex Gaertn. .

NCBI tax id

  • NCBI tax id: 743699
  • Matching level: species

strain history: <- CFBP <- ICMP <- J. M. Young

doi: 10.13145/bacdive159562.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas dyei
  • full scientific name: Xanthomonas dyei Young et al. 2010

@ref: 66388

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Xanthomonas

species: Xanthomonas dyei

full scientific name: Xanthomonas dyei Young et al. 2010

type strain: yes

Morphology

multimedia

  • @ref: 66388
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_110537.jpg
  • caption: DSM 110537 on medium 830 at 25 °C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66388NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
66388R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 66388
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 66388
  • sample type: Metrosideros excelsa Sol. Ex Gaertn. (angular leaf lesion with a dark non-discrete margin)
  • host species: Metrosideros excelsa
  • geographic location: Bay of Plenty Omahanui (37° 27' S, 176° 54' E)
  • country: New Zealand
  • origin.country: NZL
  • continent: Australia and Oceania
  • latitude: -37.45
  • longitude: 176.9

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Plant#Leaf (Phyllosphere)
#Host#Plants#Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_92.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
  • Last taxonomy: Xanthomonas
  • 16S sequence: JQ955625
  • Sequence Identity:
  • Total samples: 52152
  • soil counts: 10026
  • aquatic counts: 6826
  • animal counts: 28252
  • plant counts: 7048

Safety information

risk assessment

  • @ref: 66388
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66388
  • description: Xanthomonas dyei strain ICMP 12167 16S ribosomal RNA gene, partial sequence
  • accession: JQ955625
  • length: 1465
  • database: ena
  • NCBI tax ID: 743699

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas dyei CFBP7245GCA_002939865scaffoldncbi743699
66792Xanthomonas dyei strain CFBP7245743699.3wgspatric743699
66792Xanthomonas dyei CFBP72452784132091draftimg743699

External links

@ref: 66388

culture collection no.: DSM 110537, CFBP 7245, NCPPB 4446, ICMP 12167

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66388Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-110537Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 110537)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/