Strain identifier
BacDive ID: 159547
Type strain: 
Species: Mycoplasma sp.
Strain Designation: CSL7491-lung
Strain history: <- D. V. Volokhov; U.S. Food and Drug Administration, Washington, D.C., USA;
NCBI tax ID(s): 2108 (species)
version 8.1 (current version)
General
@ref: 66373
BacDive-ID: 159547
DSM-Number: 23981
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycoplasma sp. CSL7491-lung is a mesophilic bacterium that was isolated from lung swab from autopsied Zalophus californianus .
NCBI tax id
- NCBI tax id: 2108
- Matching level: species
strain history
- @ref: 66373
- history: <- D. V. Volokhov; U.S. Food and Drug Administration, Washington, D.C., USA;
doi: 10.13145/bacdive159547.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmatales
- family: Mycoplasmataceae
- genus: Mycoplasma
- species: Mycoplasma sp.
- full scientific name: Mycoplasma Nowak 1929 (Approved Lists 1980)
@ref: 66373
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Mycoplasma
species: Mycoplasma sp.
full scientific name: Mycoplasma sp.
strain designation: CSL7491-lung
type strain: no
Culture and growth conditions
culture medium
- @ref: 66373
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 66373
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66373
- sample type: lung swab from autopsied Zalophus californianus (California sea lion)
- host species: Zalophus californianus
- geographic location: California, Monterey County
- country: USA
- origin.country: USA
- continent: North America
- latitude: 36.604
- longitude: -121.898
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Aquatic mammal |
| #Host Body-Site | #Oral cavity and airways | #Lung |
| #Infection | #Disease | #Post mortem |
| #Infection | #Patient | #Swab |
Sequence information
16S sequences
- @ref: 66373
- description: Mycoplasma sp. CSL7491-lung 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
- accession: EU859981
- length: 2264
- database: ena
- NCBI tax ID: 549718
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplasma sp. CSL7491-lung | GCA_018913965 | contig | ncbi | 549718 |
| 66792 | Mycoplasma sp. CSL7491-lung | 549718.3 | wgs | patric | 549718 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 56.681 | no |
| anaerobic | no | 96.826 | no |
| halophile | yes | 55.311 | no |
| spore-forming | no | 98.059 | no |
| glucose-util | yes | 89.394 | no |
| thermophile | no | 98.263 | yes |
| aerobic | no | 95.556 | no |
| motile | no | 94.167 | no |
| flagellated | no | 97.585 | no |
| glucose-ferment | yes | 76.912 | no |
External links
@ref: 66373
culture collection no.: DSM 23981, NCTC 13511
straininfo link
- @ref: 112026
- straininfo: 403700
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66373 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23981 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23981) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112026 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403700.1 |