Strain identifier
BacDive ID: 159539
Type strain: 
Species: Megamonas funiformis
Strain history: <- F. Cadoret, CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P3344
NCBI tax ID(s): 437897 (species)
version 9.3 (current version)
General
@ref: 66365
BacDive-ID: 159539
DSM-Number: 103915
keywords: genome sequence, Bacteria, mesophilic
description: Megamonas funiformis DSM 103915 is a mesophilic bacterium that was isolated from stool sample.
NCBI tax id
- NCBI tax id: 437897
- Matching level: species
strain history
- @ref: 66365
- history: <- F. Cadoret, CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P3344
doi: 10.13145/bacdive159539.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Selenomonadaceae
- genus: Megamonas
- species: Megamonas funiformis
- full scientific name: Megamonas funiformis Sakon et al. 2008
@ref: 66365
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Selenomonadaceae
genus: Megamonas
species: Megamonas funiformis
full scientific name: Megamonas funiformis Sakon et al. 2008
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66365 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
| 66365 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 66365
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 98.7
Isolation, sampling and environmental information
isolation
- @ref: 66365
- sample type: stool sample
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Gastrointestinal tract
- Cat3: #Feces (Stool)
Safety information
risk assessment
- @ref: 66365
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Megamonas funiformis Marseille-P3344T | GCA_900128435 | scaffold | ncbi | 437897 |
| 66792 | Megamonas funiformis Marseille-P3344 | 2842967777 | draft | img | 437897 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 89.623 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.511 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.891 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82.884 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 90.441 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 83.909 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 82.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 61.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 77.3 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 98.7 |
External links
@ref: 66365
culture collection no.: DSM 103915, Marseille-P3344
straininfo link
- @ref: 112019
- straininfo: 398947
literature
- topic: Genetics
- Pubmed-ID: 29326224
- title: Draft Genome Sequence of Megamonas funiformis Strain Marseille-P3344, Isolated from a Human Fecal Microbiota.
- authors: Maaloum M, Diop A, Ndongo S, Nguyen TT, Cadoret F, Raoult D, Fournier PE
- journal: Genome Announc
- DOI: 10.1128/genomeA.01459-17
- year: 2018
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66365 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103915 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103915) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 112019 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398947.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |