Strain identifier
BacDive ID: 159479
Type strain:
Species: Streptomyces triticagri
Strain Designation: NEAU-YY421
Strain history: <- J. Zhao, School of Life Science,Northeast Agricultural University, Harbin, P.R. China; NEAU-YY421 <-
NCBI tax ID(s): 2293568 (species)
General
@ref: 66302
BacDive-ID: 159479
DSM-Number: 106775
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic
description: Streptomyces triticagri NEAU-YY421 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.
NCBI tax id
- NCBI tax id: 2293568
- Matching level: species
strain history
- @ref: 66302
- history: <- J. Zhao, School of Life Science,Northeast Agricultural University, Harbin, P.R. China; NEAU-YY421 <-
doi: 10.13145/bacdive159479.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces triticagri
- full scientific name: Streptomyces triticagri Han et al. 2020
@ref: 66302
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces triticagri
full scientific name: Streptomyces triticagri Han et al. 2019
strain designation: NEAU-YY421
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell length | cell width | cell shape |
---|---|---|---|---|---|---|
69480 | no | 90.493 | ||||
69480 | 100 | positive | ||||
69500 | no | positive | 0.7-1.0 µm | 0.5-0.6 µm | spore-shaped |
colony morphology
@ref | colony color | medium used |
---|---|---|
69326 | Black brown (8022) | ISP 7 |
69326 | Black brown (802) | ISP 4 |
69326 | Grey brown (8019) | ISP 3 |
69326 | Grey brown (8019), sepia brown (8014) | ISP 5 |
69326 | Ivory (1014), black brown (8022) | ISP 6 |
69326 | Nut brown (8011) | suter without tyrosine |
69326 | Olive brown (8008) | suter with tyrosine |
69326 | Sepia brown (8014), black brown (8022) | ISP 2 |
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name | further description |
---|---|---|---|---|---|
69326 | yes | Aerial mycelium | Signal white (9003), grey white (9002) | ISP 2 | |
69326 | yes | Aerial mycelium | Signal white (9003) | ISP 3 | |
69326 | yes | Aerial mycelium | Cream (9001), signal white (9003) | ISP 4 | |
69326 | yes | Aerial mycelium | Cream (9001), silk grey (7044) | ISP 5 | |
69326 | yes | Aerial mycelium | Stone grey (7030) | ISP 6 | |
69326 | yes | Aerial mycelium | Signal grey (7004), signal white (9003) | ISP 7 | |
69326 | yes | Aerial mycelium | Stone grey (7030) | suter with tyrosine | |
69326 | yes | Aerial mycelium | Stone grey (7030) | suter without tyrosine | |
69500 | yes | branched substrate hyphae | ISP 3 | ||
69500 | yes | aerial mycelium | ISP 3 | differentiated into straight or flexuous spore chains consisting of cylindrical spores |
pigmentation
@ref | production | name | color |
---|---|---|---|
69326 | no | Melanin | |
69326 | yes | soluble pigment | Signal brown (8002), fawn brown (8007), green brown (8000), khaki grey (7008), ochre yellow (1024) |
multimedia
- @ref: 66302
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106775.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
66302 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
69500 | ISP 1 | yes | ||
69500 | ISP 2 | yes | ||
69500 | ISP 3 | yes | ||
69500 | ISP 4 | yes | ||
69500 | ISP 5 | yes | ||
69500 | ISP 6 | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
66302 | positive | growth | 28 | mesophilic |
69500 | positive | growth | 10.0-40.0 | |
69500 | positive | optimum | 28 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
69500 | positive | growth | 5.0-9.0 |
69500 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 69500
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence | spore description | type of spore |
---|---|---|---|---|
69480 | yes | 100 | ||
69481 | yes | 100 | ||
69500 | yes | straight spore chains of cylindrical spores (0.5-0.6×0.7-1.0 µm) | spore |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
69326 | NaCl | positive | growth | 0-5 % |
69500 | NaCl | positive | growth | 0.0-13.0 %(w/v) |
69500 | NaCl | positive | optimum | 0.0-1.0 %(w/v) |
observation
- @ref: 69500
- observation: The polar lipid profile contains aminophopholipid, diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside.
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69326 | 22599 | arabinose | + | growth |
69326 | 62968 | cellulose | +/- | growth |
69326 | 28757 | fructose | + | growth |
69326 | 17234 | glucose | + | growth |
69326 | 17268 | inositol | + | growth |
69326 | 37684 | mannose | +/- | growth |
69326 | 16634 | raffinose | +/- | growth |
69326 | 26546 | rhamnose | + | growth |
69326 | 17992 | sucrose | +/- | growth |
69326 | 18222 | xylose | + | growth |
69500 | 4853 | esculin | - | hydrolysis |
69500 | 53424 | tween 20 | - | hydrolysis |
69500 | 15428 | glycine | - | nitrogen source |
69500 | 17203 | L-proline | - | nitrogen source |
69500 | 16857 | L-threonine | - | nitrogen source |
69500 | 17895 | L-tyrosine | - | nitrogen source |
69500 | 17632 | nitrate | - | reduction |
69500 | 15824 | D-fructose | + | carbon source |
69500 | 12936 | D-galactose | + | carbon source |
69500 | 17634 | D-glucose | + | carbon source |
69500 | 16899 | D-mannitol | + | carbon source |
69500 | 16024 | D-mannose | + | carbon source |
69500 | 16988 | D-ribose | + | carbon source |
69500 | 17924 | D-sorbitol | + | carbon source |
69500 | 65327 | D-xylose | + | carbon source |
69500 | 16813 | galactitol | + | carbon source |
69500 | 30849 | L-arabinose | + | carbon source |
69500 | 62345 | L-rhamnose | + | carbon source |
69500 | 17716 | lactose | + | carbon source |
69500 | 17306 | maltose | + | carbon source |
69500 | 17268 | myo-inositol | + | carbon source |
69500 | 16634 | raffinose | + | carbon source |
69500 | 17992 | sucrose | + | carbon source |
69500 | 28017 | starch | + | hydrolysis |
69500 | 53423 | tween 40 | + | hydrolysis |
69500 | 53426 | tween 80 | + | hydrolysis |
69500 | 16919 | creatine | + | nitrogen source |
69500 | 16977 | L-alanine | + | nitrogen source |
69500 | 16467 | L-arginine | + | nitrogen source |
69500 | 17196 | L-asparagine | + | nitrogen source |
69500 | 29991 | L-aspartate | + | nitrogen source |
69500 | 29985 | L-glutamate | + | nitrogen source |
69500 | 18050 | L-glutamine | + | nitrogen source |
69500 | 17115 | L-serine | + | nitrogen source |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
- @ref: 69500
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
69500 | urease | + | 3.5.1.5 |
69500 | catalase | + | 1.11.1.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69326 | + | - | - | + | - | + | + | + | - | - | + | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69326 | + | + | + | +/- | + | + | +/- | +/- | +/- | + | + | - | + | - | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | enrichment culture | enrichment culture composition | enrichment culture duration | enrichment culture temperature |
---|---|---|---|---|---|---|---|---|---|---|---|
66302 | soil | central China, Henan province, Zhumadian (33° 5' 50.9'' N, 113° 57' 3'' E) | China | CHN | Asia | 33.0975 | 113.951 | ||||
69500 | soil sample rhizosphere of Triticum aestivum | Zhumadian, Henan Province | China | CHN | Asia | DPA | DPA supplemented with cycloheximide (50 mg/l) and nalidixic acid (20 mg/l). | 28 days | 28 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 66302
- description: Streptomyces sp. NEAU-YY421 16S ribosomal RNA gene, partial sequence
- accession: MH144587
- length: 1520
- database: ena
- NCBI tax ID: 2293568
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces triticagri NEAU-YY421 | GCA_003429565 | scaffold | ncbi | 2293568 |
66792 | Streptomyces triticagri NEAU-YY421 | 2862290372 | draft | img | 2293568 |
69500 | genome sequence | QUAK00000000 | ncbi | 2293568 |
GC content
- @ref: 69500
- GC-content: 71.1
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 92.922 | no |
flagellated | no | 97.694 | no |
gram-positive | yes | 91.235 | no |
anaerobic | no | 99.367 | no |
aerobic | yes | 93.702 | no |
halophile | no | 90.717 | no |
spore-forming | yes | 94.722 | no |
glucose-util | yes | 86.39 | no |
thermophile | no | 98.313 | yes |
glucose-ferment | no | 87.745 | yes |
External links
@ref: 66302
culture collection no.: DSM 106775, CGMCC 4.7476
straininfo link
- @ref: 111969
- straininfo: 402380
literature
- topic: Phylogeny
- Pubmed-ID: 31613740
- title: Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.).
- authors: Han C, Yu Z, Zhao J, Shi H, Hu J, Yu B, Song J, Shen Y, Xiang W, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003727
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Triticum/*microbiology
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66302 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106775 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106775) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69326 | Wink, J. | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | https://cdn.dsmz.de/wink/DSM%20106775.pdf | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
69500 | Kallayanee Naloka, Pattaraporn Yukphan, Minenosuke Matsutani, Kazunobu Matsushita, Gunjana Theeragool | Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.) | 10.1099/ijsem.0.003727 | |
111969 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402380.1 |