Strain identifier

BacDive ID: 159478

Type strain: Yes

Species: Faecalibacterium hattorii

Strain Designation: APC922/41-1

Strain history: <- B. Fitzgerald, University College Cork, Microbiology; APC922/41-1

NCBI tax ID(s): 853 (species)

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General

@ref: 66301

BacDive-ID: 159478

DSM-Number: 107841

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Faecalibacterium hattorii APC922/41-1 is a mesophilic bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 853
  • Matching level: species

strain history

  • @ref: 66301
  • history: <- B. Fitzgerald, University College Cork, Microbiology; APC922/41-1

doi: 10.13145/bacdive159478.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Faecalibacterium
  • species: Faecalibacterium hattorii
  • full scientific name: Faecalibacterium hattorii Sakamoto et al. 2022

@ref: 66301

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Faecalibacterium

species: Faecalibacterium hattorii

full scientific name: Faecalibacterium hattorii Sakamoto et al. 2022

strain designation: APC922/41-1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66301CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
66301YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)yeshttps://mediadive.dsmz.de/medium/1611Name: YCFA MEDIUM (modified) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

culture temp

  • @ref: 66301
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
66301---+++/---+--------+-+-----++--
66301---+++--+--------+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 66301
  • sample type: Human feces
  • geographic location: Cork, University College of Cork
  • country: Ireland
  • origin.country: IRL
  • continent: Europe
  • latitude: 51.9036
  • longitude: -8.4684

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 66301
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 66301
  • description: Faecalibacterium prausnitzii strain APC922/41-1, whole genome shotgun sequencing project
  • accession: PRLC00000000
  • length: 54
  • database: ena
  • NCBI tax ID: 853

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Faecalibacterium hattorii APC922/41-1GCA_003287455contigncbi2935520
66792Faecalibacterium prausnitzii APC922/41-12849845975draftimg853

External links

@ref: 66301

culture collection no.: DSM 107841, JCM 39210

straininfo link

  • @ref: 111968
  • straininfo: 403001

literature

  • topic: Phylogeny
  • Pubmed-ID: 35416766
  • title: Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
  • authors: Sakamoto M, Sakurai N, Tanno H, Iino T, Ohkuma M, Endo A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.005379
  • year: 2022
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, *Chickens, DNA, Bacterial/genetics, Faecalibacterium, *Fatty Acids/chemistry, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66301Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107841Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107841)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
111968Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403001.1