Strain identifier

BacDive ID: 159463

Type strain: No

Species: Pseudomonas jessenii

Strain Designation: GO3

Strain history: <- M. Otzen, University of Groningen, Netherlands; GO3

NCBI tax ID(s): 77298 (species)

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General

@ref: 66286

BacDive-ID: 159463

DSM-Number: 106008

keywords: genome sequence, Bacteria, mesophilic

description: Pseudomonas jessenii GO3 is a mesophilic bacterium that was isolated from grassland soil.

NCBI tax id

  • NCBI tax id: 77298
  • Matching level: species

strain history

  • @ref: 66286
  • history: <- M. Otzen, University of Groningen, Netherlands; GO3

doi: 10.13145/bacdive159463.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas jessenii
  • full scientific name: Pseudomonas jessenii Verhille et al. 1999

@ref: 66286

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas jessenii

full scientific name: Pseudomonas jessenii Verhille et al. 1999 emend. Kosina et al. 2013

strain designation: GO3

type strain: no

Morphology

multimedia

  • @ref: 66286
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106008.jpg
  • caption: DSM 106008 on medium 1 at 28 °C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66286NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
66286TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
66286MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)yeshttps://mediadive.dsmz.de/medium/465Name: MINERAL MEDIUM PH 7.25 (DSMZ Medium 465; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 3.5 g/l KH2PO4 1.0 g/l MgCl2 x 6 H2O 0.1 g/l Na2-EDTA 0.0005 g/l H3BO3 0.0003 g/l FeSO4 x 7 H2O 0.0002 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 66286
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
66286---+----+++++-++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 66286
  • sample type: grassland soil
  • geographic location: Groningen (53° 13' 48.0'' N, 06° 32' 24.0'' E)
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe
  • latitude: 53.23
  • longitude: 6.54

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Grassland
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 66286
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Pseudomonas jessenii GO3
  • accession: GCA_003225755
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 77298

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes80.941no
gram-positiveno98.112no
anaerobicno98.284no
halophileno85.51no
spore-formingno96.261no
aerobicyes94.933no
glucose-utilyes92.739yes
thermophileno99.817yes
motileyes92.549no
glucose-fermentno90.204yes

External links

@ref: 66286

culture collection no.: DSM 106008

straininfo link

  • @ref: 111955
  • straininfo: 408144

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66286Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106008Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106008)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
111955Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408144.1