Strain identifier
BacDive ID: 159398
Type strain: 
Species: Helicobacter vulpis
Strain Designation: L2
Strain history: <- I. Gruntar, Univ. Ljubljana; L2
NCBI tax ID(s): 2316076 (species)
version 8.1 (current version)
General
@ref: 66221
BacDive-ID: 159398
DSM-Number: 108727
keywords: genome sequence, Bacteria, mesophilic
description: Helicobacter vulpis L2 is a mesophilic bacterium that was isolated from gastric mucosa of a stomach of a fox.
NCBI tax id
- NCBI tax id: 2316076
- Matching level: species
strain history
- @ref: 66221
- history: <- I. Gruntar, Univ. Ljubljana; L2
doi: 10.13145/bacdive159398.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter vulpis
- full scientific name: Helicobacter vulpis Gruntar et al. 2020
@ref: 66221
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter vulpis
full scientific name: Helicobacter vulpis Gruntar et al. 2020
strain designation: L2
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66221 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 66221 | HELICOBACTER MEDIUM (DSMZ Medium 1279) | yes | https://mediadive.dsmz.de/medium/1279 | Name: HELICOBACTER MEDIUM (DSMZ Medium 1279) Composition: Brucella Broth 35.0 g/l Skirrow supplement Vitox Fetal bovine serum Demineralized water Amphotericin |
culture temp
- @ref: 66221
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66221
- sample type: gastric mucosa of a stomach of a fox
- geographic location: Lukovica pri Domzalah
- country: Slovenia
- origin.country: SVN
- continent: Europe
- latitude: 46.1756
- longitude: 14.6954
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Canidae (Dog) |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
Sequence information
Genome sequences
- @ref: 66792
- description: Helicobacter vulpis L2
- accession: GCA_003660395
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2316076
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.248 | no |
| flagellated | no | 57.145 | no |
| gram-positive | no | 99.21 | no |
| anaerobic | no | 87.962 | no |
| aerobic | no | 95.559 | no |
| halophile | no | 85.163 | no |
| spore-forming | no | 95.872 | no |
| glucose-util | no | 74.894 | no |
| thermophile | no | 57.683 | yes |
| glucose-ferment | no | 82.21 | no |
External links
@ref: 66221
culture collection no.: DSM 108727, CCUG 72909
straininfo link
- @ref: 111893
- straininfo: 398989
literature
- topic: Phylogeny
- Pubmed-ID: 32068523
- title: Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes).
- authors: Gruntar I, Papic B, Pate M, Zajc U, Ocepek M, Kusar D
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004050
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Foxes/*microbiology, Gastric Mucosa/*microbiology, Helicobacter/*classification/isolation & purification, Helicobacter Infections/microbiology/veterinary, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Slovenia, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Whole Genome Sequencing
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66221 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108727 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108727) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111893 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398989.1 |