Strain identifier
BacDive ID: 159371
Type strain: 
Species: Paenibacillus sp.
Strain Designation: YT-0039
Strain history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-0039 <- Y. Tagami
NCBI tax ID(s): 58172 (species)
General
@ref: 66194
BacDive-ID: 159371
DSM-Number: 21755
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. YT-0039 is a mesophilic bacterium that was isolated from deep soil collected from 15 m below the ground.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 66194
- history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-0039 <- Y. Tagami
doi: 10.13145/bacdive159371.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 66194
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: YT-0039
type strain: no
Culture and growth conditions
culture medium
- @ref: 66194
- name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514d
- composition: Name: MODIFIED BACTO MARINE BROTH (DSMZ Medium 514d; with strain-specific modifications) Composition: Difco marine broth 37.4 g/l Agar 15.0 g/l Malt extract 1.0 g/l Soy peptone 1.0 g/l Pancreatic digest of casein 1.0 g/l MgSO4 0.01 g/l Distilled water
culture temp
- @ref: 66194
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66194
- sample type: deep soil collected from 15 m below the ground
- geographic location: Arsugi
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_146850.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_1903;97_2287;98_2814;99_146850&stattab=map
- Last taxonomy: Paenibacillus senegalensis subclade
- 16S sequence: AB362823
- Sequence Identity:
- Total samples: 158
- soil counts: 88
- aquatic counts: 10
- animal counts: 23
- plant counts: 37
Sequence information
16S sequences
- @ref: 66194
- description: Paenibacillus sp. YT0039 gene for 16S rRNA, partial sequence
- accession: AB362823
- length: 1518
- database: ena
- NCBI tax ID: 477671
External links
@ref: 66194
culture collection no.: DSM 21755
straininfo link
- @ref: 111866
- straininfo: 408287
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66194 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21755 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21755) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111866 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408287.1 |