Strain identifier
BacDive ID: 159369
Type strain: 
Species: Paenibacillus sp.
Strain Designation: YT-0011
Strain history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-0011 <- Y. Tagami
NCBI tax ID(s): 58172 (species)
General
@ref: 66192
BacDive-ID: 159369
DSM-Number: 21754
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. YT-0011 is a mesophilic bacterium that was isolated from deep soil collected from 15 m below ground.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 66192
- history: <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; YT-0011 <- Y. Tagami
doi: 10.13145/bacdive159369.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 66192
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: YT-0011
type strain: no
Culture and growth conditions
culture medium
- @ref: 66192
- name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
- growth: yes
- link: https://mediadive.dsmz.de/medium/31
- composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31; with strain-specific modifications) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l MgSO4 0.01 g/l Distilled water
culture temp
- @ref: 66192
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66192
- sample type: deep soil collected from 15 m below ground
- geographic location: Atsugi
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_146849.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_7772;97_72337;98_97221;99_146849&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: AB362822
- Sequence Identity:
- Total samples: 173
- soil counts: 129
- aquatic counts: 7
- animal counts: 12
- plant counts: 25
Sequence information
16S sequences
- @ref: 66192
- description: Paenibacillus sp. YT0011 gene for 16S rRNA, partial sequence
- accession: AB362822
- length: 1512
- database: ena
- NCBI tax ID: 477670
External links
@ref: 66192
culture collection no.: DSM 21754
straininfo link
- @ref: 111864
- straininfo: 407224
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66192 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21754 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21754) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111864 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407224.1 |