Strain identifier
BacDive ID: 159359
Type strain: 
Species: Nonomuraea rhizosphaerae
Strain Designation: NEAU-mq18
Strain history: <- J. Zhao, Northeast Agricultural Univ., Harbin, China; NEAU-mq18 <- S. Mu, School of Life Science, Northeast Agricultural University; NEAU-mq18
NCBI tax ID(s): 2665663 (species)
version 8.1 (current version)
General
@ref: 66182
BacDive-ID: 159359
DSM-Number: 105761
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nonomuraea rhizosphaerae NEAU-mq18 is a mesophilic bacterium that was isolated from soil of Mount Xianglu.
NCBI tax id
- NCBI tax id: 2665663
- Matching level: species
strain history
- @ref: 66182
- history: <- J. Zhao, Northeast Agricultural Univ., Harbin, China; NEAU-mq18 <- S. Mu, School of Life Science, Northeast Agricultural University; NEAU-mq18
doi: 10.13145/bacdive159359.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Nonomuraea
- species: Nonomuraea rhizosphaerae
- full scientific name: Nonomuraea rhizosphaerae Zhao et al. 2018
@ref: 66182
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Streptosporangiaceae
genus: Nonomuraea
species: Nonomuraea rhizosphaerae
full scientific name: Nonomuraea rhizosphaerae Zhao et al. 2018
strain designation: NEAU-mq18
type strain: no
Morphology
multimedia
- @ref: 66182
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105761.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 66182
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 66182
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66182
- sample type: soil of Mount Xianglu
- geographic location: Mount Xianglu, Harbin city, Heilongjiang province (44° 4' N, 125° 42' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 44.0667
- longitude: 125.7
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 66182
- description: Nonomuraea rhizosphaerae 16S ribosomal RNA gene, partial sequence
- accession: MG271809
- length: 1516
- database: ena
- NCBI tax ID: 2665663
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nonomuraea rhizosphaerae CGMCC 4.7431 | GCA_019396405 | contig | ncbi | 2665663 |
| 66792 | Nonomuraea rhizosphaerae strain CGMCC 4.7431 | 2665663.3 | wgs | patric | 2665663 |
GC content
- @ref: 66182
- GC-content: 68.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.155 | no |
| gram-positive | yes | 91.918 | no |
| anaerobic | no | 98.373 | no |
| halophile | no | 89.135 | no |
| spore-forming | yes | 87.867 | no |
| glucose-util | yes | 87.094 | no |
| thermophile | no | 94.392 | yes |
| aerobic | yes | 91.693 | no |
| flagellated | no | 97.654 | no |
| glucose-ferment | no | 92.367 | no |
External links
@ref: 66182
culture collection no.: DSM 105761, CGMCC 4.7431
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 29744692 | Nonomuraea rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg). | Zhao J, Mu S, Zhao Q, Jiang S, Cao P, Guo X, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1094-9 | 2018 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Hevea/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, *Soil Microbiology | Metabolism |
| Phylogeny | 35666673 | Nonomuraea aurantiaca sp. nov., a novel cellulase-producing actinobacterium isolated from soil. | Lin J, Zhang L, Qian L, Yang Y, Xiang W, Zhao J, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005411 | 2022 | *Actinomycetales, Bacterial Typing Techniques, Base Composition, *Cellulase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66182 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105761 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105761) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |