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Strain identifier

BacDive ID: 159358

Type strain: Yes

Species: Pseudomonas inefficax

Strain Designation: CFB 8493, JV551A3

Strain history: <- D. Muller, Université de Lyon, Villeurbanne, France; JV551A3 <- J. Vacheron, Université Claude Bernard, Lyon, France; JV551A3

NCBI tax ID(s): 2078786 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 66181

BacDive-ID: 159358

DSM-Number: 108619

keywords: genome sequence, Bacteria, mesophilic

description: Pseudomonas inefficax CFB 8493 is a mesophilic bacterium that was isolated from maize rhizospheric soil.

NCBI tax id

  • NCBI tax id: 2078786
  • Matching level: species

strain history: <- D. Muller, Université de Lyon, Villeurbanne, France; JV551A3 <- J. Vacheron, Université Claude Bernard, Lyon, France; JV551A3

doi: 10.13145/bacdive159358.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas inefficax
  • full scientific name: Pseudomonas inefficax Keshavarz-Tohid et al. 2019

@ref: 66181

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas inefficax

full scientific name: Pseudomonas inefficax Keshavarz-Tohid et al. 2019

strain designation: CFB 8493, JV551A3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes83.811
6948099.647negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66181NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
66181TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 66181
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.705

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 94.802

Isolation, sampling and environmental information

isolation

  • @ref: 66181
  • sample type: maize rhizospheric soil
  • geographic location: Béligneux "AIN 01" (45° 52' 18.9'' N, 5° 07' 18.2'' E)
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Sequence information

Genome sequences

  • @ref: 66792
  • description: Pseudomonas inefficax JV551A3
  • accession: GCA_900277125
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2078786

External links

@ref: 66181

culture collection no.: DSM 108619

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny31122691Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov.Keshavarz-Tohid V, Vacheron J, Dubost A, Prigent-Combaret C, Taheri P, Tarighi S, Taghavi SM, Moenne-Loccoz Y, Muller DSyst Appl Microbiol10.1016/j.syapm.2019.04.0042019DNA, Bacterial/genetics, Genes, Bacterial/genetics, Genes, Essential/genetics, Genome, Bacterial/*genetics, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Pseudomonas putida/*classification/genetics, Sequence Analysis, DNA, Soil Microbiology, Species SpecificityGenetics
Genetics34589566Draft genome sequence data of a 4-nitrophenol- degrading bacterium, Pseudomonas alloputida strain PNP.Arora PK, Saroj RS, Mishra R, Omar RA, Kumari P, Srivastava A, Garg SK, Singh VPData Brief10.1016/j.dib.2021.1073902021

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66181Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108619Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108619)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes