Strain identifier
BacDive ID: 159358
Type strain: 
Species: Pseudomonas inefficax
Strain Designation: CFB 8493, JV551A3
Strain history: <- D. Muller, Université de Lyon, Villeurbanne, France; JV551A3 <- J. Vacheron, Université Claude Bernard, Lyon, France; JV551A3
NCBI tax ID(s): 2078786 (species)
version 8.1 (current version)
General
@ref: 66181
BacDive-ID: 159358
DSM-Number: 108619
keywords: genome sequence, Bacteria, mesophilic
description: Pseudomonas inefficax CFB 8493 is a mesophilic bacterium that was isolated from maize rhizospheric soil.
NCBI tax id
- NCBI tax id: 2078786
- Matching level: species
strain history
- @ref: 66181
- history: <- D. Muller, Université de Lyon, Villeurbanne, France; JV551A3 <- J. Vacheron, Université Claude Bernard, Lyon, France; JV551A3
doi: 10.13145/bacdive159358.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas inefficax
- full scientific name: Pseudomonas inefficax Keshavarz-Tohid et al. 2019
@ref: 66181
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas inefficax
full scientific name: Pseudomonas inefficax Keshavarz-Tohid et al. 2019
strain designation: CFB 8493, JV551A3
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 66181 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 66181 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 66181
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66181
- sample type: maize rhizospheric soil
- geographic location: Béligneux "AIN 01" (45° 52' 18.9'' N, 5° 07' 18.2'' E)
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Sequence information
Genome sequences
- @ref: 66792
- description: Pseudomonas inefficax JV551A3
- accession: GCA_900277125
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2078786
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 85.728 | no |
| gram-positive | no | 98.577 | no |
| anaerobic | no | 98.109 | no |
| aerobic | yes | 93.329 | no |
| halophile | no | 85.089 | no |
| spore-forming | no | 95.154 | no |
| thermophile | no | 99.879 | no |
| glucose-util | yes | 91.882 | no |
| motile | yes | 92.232 | no |
| glucose-ferment | no | 87.81 | no |
External links
@ref: 66181
culture collection no.: DSM 108619
straininfo link
- @ref: 111855
- straininfo: 407375
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 31122691 | Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. | Keshavarz-Tohid V, Vacheron J, Dubost A, Prigent-Combaret C, Taheri P, Tarighi S, Taghavi SM, Moenne-Loccoz Y, Muller D | Syst Appl Microbiol | 10.1016/j.syapm.2019.04.004 | 2019 | DNA, Bacterial/genetics, Genes, Bacterial/genetics, Genes, Essential/genetics, Genome, Bacterial/*genetics, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Pseudomonas putida/*classification/genetics, Sequence Analysis, DNA, Soil Microbiology, Species Specificity | Genetics |
| Genetics | 34589566 | Draft genome sequence data of a 4-nitrophenol- degrading bacterium, Pseudomonas alloputida strain PNP. | Arora PK, Saroj RS, Mishra R, Omar RA, Kumari P, Srivastava A, Garg SK, Singh VP | Data Brief | 10.1016/j.dib.2021.107390 | 2021 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66181 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108619 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108619) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111855 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407375.1 |