Strain identifier

BacDive ID: 159357

Type strain: No

Species: Pantoea piersonii

Strain Designation: IIIF1SW-P2

Strain history: <- K. Venkateswaran, California Inst. Technology (Caltech), Pasadena, USA; IIIF1SW-P2 <-

NCBI tax ID(s): 2364647 (species)

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General

@ref: 66180

BacDive-ID: 159357

DSM-Number: 108198

keywords: genome sequence, Bacteria, mesophilic

description: Pantoea piersonii IIIF1SW-P2 is a mesophilic bacterium that was isolated from ISS surface wipes.

NCBI tax id

  • NCBI tax id: 2364647
  • Matching level: species

strain history

  • @ref: 66180
  • history: <- K. Venkateswaran, California Inst. Technology (Caltech), Pasadena, USA; IIIF1SW-P2 <-

doi: 10.13145/bacdive159357.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Pantoea
  • species: Pantoea piersonii
  • full scientific name: Pantoea piersonii (Singh et al. 2019) Palmer and Coutinho 2022

  • synonyms

    @refsynonym
    20215Pantoea piersonii
    20215Kalamiella piersonii

@ref: 66180

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Erwiniaceae

genus: Kalamiella

species: Kalamiella piersonii

full scientific name: Kalamiella piersonii Singh et al. 2019

strain designation: IIIF1SW-P2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 66180
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 66180
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
66180++/--------+-+++-+---+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 66180
  • sample type: ISS surface wipes
  • geographic location: Pasadena, ISS-JPL
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Clean room
#Engineered#Built environment#Surface swab

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pantoea piersonii IIIF1SW-P2GCA_003612015scaffoldncbi2364647
66792Kalamiella piersonii IIIF1SW-P22898079705draftimg2364647

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.391no
flagellatedno64.479no
gram-positiveno98.131no
anaerobicno98.479no
aerobicno72.101no
halophileno87.128no
spore-formingno94.002no
glucose-utilyes95.882no
thermophileno99.358yes
glucose-fermentyes90.109yes

External links

@ref: 66180

culture collection no.: DSM 108198, NRRL B-65522

straininfo link

  • @ref: 111854
  • straininfo: 401991

literature

  • topic: Phylogeny
  • Pubmed-ID: 32872396
  • title: First Report of Pathogenic Bacterium Kalamiella piersonii Isolated from Urine of a Kidney Stone Patient: Draft Genome and Evidence for Role in Struvite Crystallization.
  • authors: Rekha PD, Hameed A, Manzoor MAP, Suryavanshi MV, Ghate SD, Arun AB, Rao SS, Athmika, Bajire SK, Mujeeburahiman M, Young CC
  • journal: Pathogens
  • DOI: 10.3390/pathogens9090711
  • year: 2020

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66180Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108198Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108198)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
111854Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401991.1