Strain identifier
BacDive ID: 159355
Type strain: 
Species: Mobiluncus porci
Strain Designation: RF-GAM-744-WT-7
Strain history: B. Abt; DSMZ, Germany; DSM 108840 (=RF-GAM-744-WT-7) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2652278 (species)
version 9.3 (current version)
General
@ref: 66178
BacDive-ID: 159355
DSM-Number: 108840
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mobiluncus porci RF-GAM-744-WT-7 is a mesophilic bacterium that was isolated from Aachener Minipig, WT, 4 months old, feces.
NCBI tax id
- NCBI tax id: 2652278
- Matching level: species
strain history
| @ref | history |
|---|---|
| 66178 | <- T. Clavel , RWTH Aachen, Germany; RF-GAM-744-WT-7 |
| 67770 | B. Abt; DSMZ, Germany; DSM 108840 (=RF-GAM-744-WT-7) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive159355.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Mobiluncus
- species: Mobiluncus porci
- full scientific name: Mobiluncus porci Wylensek et al. 2021
@ref: 66178
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Mobiluncus
species: Mobiluncus porci
full scientific name: Mobiluncus porci
strain designation: RF-GAM-744-WT-7
type strain: yes
Culture and growth conditions
culture medium
- @ref: 66178
- name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/215c
- composition: Name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c) Composition: Brain heart infusion 37.0 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 66178 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 95.2
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 66178 | Aachener Minipig, WT, 4 months old, feces | Aachen | Germany | DEU | Europe |
| 67770 | Feces of an Aachen minipig in Germany |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
Sequence information
16S sequences
- @ref: 66178
- description: Mobiluncus porci strain RF-GAM-744-WT-7 16S ribosomal RNA gene, partial sequence
- accession: MN537552
- length: 1403
- database: nuccore
- NCBI tax ID: 2652278
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mobiluncus porci RF-GAM-744-WT-7 | GCA_009695935 | contig | ncbi | 2652278 |
| 66792 | Mobiluncus holmesii strain RF-GAM-744-WT-7 | 144178.4 | wgs | patric | 144178 |
GC content
- @ref: 67770
- GC-content: 56.3
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 67.601 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 54.84 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 75.355 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 79.174 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.956 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 60.125 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 85.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 87.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 89.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 95.2 |
External links
@ref: 66178
culture collection no.: DSM 108840, JCM 34379
straininfo link
- @ref: 111852
- straininfo: 402188
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66178 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-108840 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108840) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 111852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402188.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |