Strain identifier

BacDive ID: 159213

Type strain: Yes

Species: Cellulomonas telluris

Strain history: <- Yu-Qin Zhang, Institute of Medicinal Biotechnology

NCBI tax ID(s): 2306636 (species)

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General

@ref: 66036

BacDive-ID: 159213

DSM-Number: 105430

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Cellulomonas telluris DSM 105430 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, Badain Jaran desert.

NCBI tax id

  • NCBI tax id: 2306636
  • Matching level: species

strain history

@refhistory
66036<- Y.-Q. Zhang, Chinese Acad. Med. Sciences & Peking Union Medical College, Beijing, China; CPCC 204705 <- Y. Sun
67771<- Yu-Qin Zhang, Institute of Medicinal Biotechnology

doi: 10.13145/bacdive159213.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Cellulomonadaceae
  • genus: Cellulomonas
  • species: Cellulomonas telluris
  • full scientific name: Cellulomonas telluris Shi et al. 2020

@ref: 66036

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Cellulomonadaceae

genus: Cellulomonas

species: Cellulomonas telluris

full scientific name: Cellulomonas telluris Shi et al. 2020

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell lengthcell widthcell shapemotility
69480positive100
69553positive0.9-1.8 µm0.8-1.0 µmrod-shapedyes

colony morphology

  • @ref: 69553
  • colony color: yellow, glossy and smooth
  • incubation period: 4 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
66036TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
69553Reasoner's 2A agar (R2A)yes

culture temp

@refgrowthtypetemperaturerange
66036positivegrowth28mesophilic
67771positivegrowth28mesophilic
69553positivegrowth20-45
69553positiveoptimum28mesophilic

culture pH

@refabilitytypepH
69553positivegrowth6.0-8.0
69553positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.638

halophily

  • @ref: 69553
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6955328053melibiose-assimilation
6955316634raffinose-assimilation
695535291gelatin-hydrolysis
6955328017starch-hydrolysis
6955317925alpha-D-glucose+assimilation
6955317057cellobiose+assimilation
6955315824D-fructose+assimilation
6955312936D-galactose+assimilation
6955316899D-mannitol+assimilation
6955316024D-mannose+assimilation
6955317814D-salicin+assimilation
6955317924D-sorbitol+assimilation
6955365327D-xylose+assimilation
6955323652dextrin+assimilation
6955328066gentiobiose+assimilation
6955317754glycerol+assimilation
6955317596inosine+assimilation
6955362345L-rhamnose+assimilation
6955317306maltose+assimilation
69553320061methyl alpha-D-glucopyranoside+assimilation
69553320055methyl beta-D-glucopyranoside+assimilation
6955327082trehalose+assimilation
6955332528turanose+assimilation
69553168082-dehydro-D-gluconate+builds acid from
6955327613amygdalin+builds acid from
6955317634D-glucose+builds acid from
6955316899D-mannitol+builds acid from
6955316024D-mannose+builds acid from
6955317814D-salicin+builds acid from
6955365327D-xylose+builds acid from
6955328066gentiobiose+builds acid from
6955317754glycerol+builds acid from
6955328087glycogen+builds acid from
6955330849L-arabinose+builds acid from
6955362345L-rhamnose+builds acid from
6955317716lactose+builds acid from
6955317306maltose+builds acid from
69553320055methyl beta-D-glucopyranoside+builds acid from
6955317992sucrose+builds acid from
6955327082trehalose+builds acid from
6955332528turanose+builds acid from
6955317309pectin+carbon source
6955317992sucrose+carbon source
6955362968cellulose+hydrolysis
6955317632nitrate+reduction

enzymes

@refvalueactivityec
69553acid phosphatase+3.1.3.2
69553alkaline phosphatase+3.1.3.1
69553beta-glucosidase+3.2.1.21
69553catalase+1.11.1.6
69553esterase Lipase (C 8)+
69553naphthol-AS-BI-phosphohydrolase+
69553cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
66036soil, Badain Jaran desertNeimenggu Province (39° 31' 12'' N, 103° 00' 15'' E)ChinaCHNAsia
67771From soil sampleNeimenggu province(N 39° 24′ 06″ChinaCHNAsia39.4017102.617
69553soil sample, collected from the Badain Jaran desertAlashan, the Nei Mongol Autonomous RegionChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Climate#Hot#Arid
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 66036
  • description: Cellulomonas sp. CPCC 204705 16S ribosomal RNA gene, partial sequence
  • accession: MH234381
  • length: 1511
  • database: ena
  • NCBI tax ID: 2306636

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cellulomonas telluris CPCC 204705GCA_004886325contigncbi2306636
66792Cellulomonas sp. CPCC 2047052306636.3wgspatric2306636
66792Cellulomonas sp. CPCC 2047052898550215draftimg2306636
69553genome sequenceQXFN00000000ncbi2306636

GC content

  • @ref: 69553
  • GC-content: 75.4
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes82no
motileyes80.538no
gram-positiveyes86.964no
anaerobicno98.626no
aerobicyes88.143yes
halophileno88.749no
spore-formingno83.301no
glucose-utilyes84.188no
flagellatedno91.064no
thermophileno98.99yes
glucose-fermentno69.293no

External links

@ref: 66036

culture collection no.: DSM 105430, KCTC 39974, CPCC 204705

straininfo link

  • @ref: 111712
  • straininfo: 397804

literature

  • topic: Phylogeny
  • Pubmed-ID: 31661043
  • title: Cellulomonas telluris sp. nov., an endoglucanase-producing actinobacterium isolated from Badain Jaran desert sand.
  • authors: Shi YL, Sun Y, Ruan ZY, Su J, Yu LY, Zhang YQ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003806
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, *Cellulase, Cellulomonas/*classification/enzymology/isolation & purification, China, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66036Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105430Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105430)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69553Yun-Lei Shi, Ye Sun, Zhi-Yong Ruan, Jing Su, Li-Yan Yu and Yu-Qin ZhangCellulomonas telluris sp. nov., an endoglucanase-producing actinobacterium isolated from Badain Jaran desert sand10.1099/ijsem.0.003806
111712Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397804.1