Strain identifier
BacDive ID: 1592
Type strain:
Species: Bacteroides ovatus
Strain Designation: LRA 044 07 88
Strain history: CIP <- 1993, R. Mercier, bioMérieux, La Balme-les-Grottes, France: strain LRA 044 07 88 <- 1985, Analytab, Plainview, USA
NCBI tax ID(s): 411476 (strain), 28116 (species)
General
@ref: 918
BacDive-ID: 1592
DSM-Number: 1896
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Bacteroides ovatus LRA 044 07 88 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human feces.
NCBI tax id
NCBI tax id | Matching level |
---|---|
28116 | species |
411476 | strain |
strain history
@ref | history |
---|---|
918 | <- ATCC; ATCC 8483 <- A. H. Eggerth; |
67770 | ATCC 8483 <-- A. H. Eggerth. |
121472 | CIP <- 1993, R. Mercier, bioMérieux, La Balme-les-Grottes, France: strain LRA 044 07 88 <- 1985, Analytab, Plainview, USA |
doi: 10.13145/bacdive1592.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Bacteroides
- species: Bacteroides ovatus
- full scientific name: Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980)
@ref: 918
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Bacteroides
species: Bacteroides ovatus
full scientific name: Bacteroides ovatus Eggerth and Gagnon 1933 emend. Hahnke et al. 2016
strain designation: LRA 044 07 88
type strain: yes
Morphology
cell morphology
- @ref: 121472
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | type of hemolysis | incubation period |
---|---|---|
918 | gamma | 1-2 days |
121472 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
918 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
918 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
32784 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
918 | FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) | yes | https://mediadive.dsmz.de/medium/1203a | Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water |
121472 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
918 | positive | growth | 37 | mesophilic |
32784 | positive | growth | 37 | mesophilic |
44813 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
918 | anaerobe |
44813 | anaerobe |
44813 | obligate anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
121472 | 4853 | esculin | + | hydrolysis |
121472 | 17632 | nitrate | - | reduction |
121472 | 16301 | nitrite | - | reduction |
121472 | 17632 | nitrate | + | respiration |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | + | fermentation |
68380 | 16634 | raffinose | + | fermentation |
68380 | 29985 | L-glutamate | + | degradation |
68380 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 121472
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68380 | serine arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | glutamate decarboxylase | + | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68380 | alpha-arabinosidase | + | 3.2.1.55 |
68380 | beta-glucosidase | + | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | + | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
121472 | oxidase | - | |
121472 | beta-galactosidase | + | 3.2.1.23 |
121472 | gelatinase | - | |
121472 | amylase | + | |
121472 | DNase | - | |
121472 | caseinase | + | 3.4.21.50 |
121472 | catalase | + | 1.11.1.6 |
121472 | tween esterase | - | |
121472 | lecithinase | - | |
121472 | lipase | - | |
121472 | protease | - | |
121472 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44813 C14:0 2.2 14 44813 C15:0 9.7 15 44813 C16:0 4.4 16 44813 C13:0 ANTEISO 0.8 12.701 44813 C13:0 iso 0.8 12.612 44813 C14:0 ISO 2.3 13.618 44813 C15:0 2OH 0.5 16.217 44813 C15:0 3OH 3.7 16.504 44813 C15:0 ANTEISO 39.5 14.711 44813 C15:0 ISO 9.3 14.621 44813 C15:0 ISO 3OH 0.5 16.135 44813 C16:0 3OH 6.3 17.52 44813 C16:0 iso 0.3 15.626 44813 C16:0 iso 3OH 0.9 17.145 44813 C17:0 2OH 2.9 18.249 44813 C17:0 3OH 1.5 18.535 44813 C17:0 iso 3OH 10.7 18.161 44813 C18:2 ω6,9c/C18:0 ANTE 1.4 17.724 44813 unknown 13.566 2.3 13.566 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121472 | - | + | - | - | - | - | - | - | - | - | + | + | - | + | - | - | - | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
918 | - | - | + | + | - | + | + | + | - | + | + | + | + | +/- | - | + | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
918 | - | - | + | + | - | + | + | + | - | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
918 | - | - | + | + | - | + | + | + | - | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | + | - | - | - | - |
918 | - | - | + | + | - | + | + | + | +/- | + | + | + | + | +/- | - | + | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
918 | - | - | + | + | - | + | + | + | - | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | + | - | - | + | - |
918 | - | - | + | + | - | + | + | + | - | + | + | + | + | - | - | +/- | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121472 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
taxonmaps
- @ref: 69479
- File name: preview.99_1176.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_684;97_799;98_926;99_1176&stattab=map
- Last taxonomy: Bacteroides ovatus
- 16S sequence: AB510705
- Sequence Identity:
- Total samples: 79597
- soil counts: 195
- aquatic counts: 1522
- animal counts: 77814
- plant counts: 66
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
918 | 2 | Risk group (German classification) |
121472 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bacteroides ovatus 16S-23S rDNA intergenic spacer region | AF176691 | 551 | ena | 28116 |
20218 | Bacteroides ovatus ATCC:8483 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | FJ410383 | 3455 | ena | 28116 |
20218 | Bacteroides ovatus NCTC 11153 16S ribosomal RNA gene, complete sequence | L16484 | 1468 | ena | 28116 |
20218 | B.ovatus 16S rRNA (ATCC 8483T) | X83952 | 1395 | ena | 28116 |
918 | Bacteroides ovatus strain JCM5824 16S ribosomal RNA gene, partial sequence | EU136682 | 1435 | ena | 28116 |
67770 | Bacteroides ovatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5824 | AB510705 | 1459 | ena | 28116 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacteroides ovatus ATCC 8483 | GCA_001314995 | complete | ncbi | 28116 |
66792 | Bacteroides ovatus ATCC 8483 | 411476.11 | wgs | patric | 411476 |
66792 | Bacteroides ovatus strain ATCC 8483 | 28116.7 | complete | patric | 28116 |
66792 | Bacteroides ovatus strain ATCC 8483 | 28116.125 | wgs | patric | 28116 |
66792 | Bacteroides ovatus strain DSM 1896 | 28116.16 | wgs | patric | 28116 |
66792 | Bacteroides ovatus strain NCTC11153 | 28116.197 | wgs | patric | 28116 |
66792 | Bacteroides ovatus ATCC 8483 | 641380449 | draft | img | 411476 |
66792 | Bacteroides ovatus DSM 1896 | 2693429857 | draft | img | 28116 |
66792 | Bacteroides ovatus ATCC 8483 | 2684623200 | complete | img | 411476 |
67770 | Bacteroides ovatus DSM 1896 | GCA_900107475 | scaffold | ncbi | 28116 |
67770 | Bacteroides ovatus ATCC 8483 | GCA_002959635 | contig | ncbi | 28116 |
67770 | Bacteroides ovatus NCTC11153 | GCA_900445505 | contig | ncbi | 28116 |
66792 | Bacteroides ovatus ATCC 8483 | GCA_000154125 | scaffold | ncbi | 411476 |
66792 | Bacteroides ovatus ATCC 8483 | GCA_025146775 | complete | ncbi | 28116 |
66792 | Bacteroides ovatus strain ATCC 8483 | 28116.1884 | complete | patric | 28116 |
GC content
@ref | GC-content | method |
---|---|---|
918 | 40.0 | thermal denaturation, midpoint method (Tm) |
918 | 41.9 | sequence analysis |
67770 | 40 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 918
culture collection no.: DSM 1896, ATCC 8483, NCTC 11153, CCUG 4943, CIP 103756, JCM 5824, KCTC 5011, BCRC 10623
straininfo link
- @ref: 71237
- straininfo: 92789
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 2036001 | Co-utilization of polymerized carbon sources by Bacteroides ovatus grown in a two-stage continuous culture system. | MacFarlane GT, Gibson GR | Appl Environ Microbiol | 10.1128/aem.57.1.1-6.1991 | 1991 | Bacteroides/growth & development/*metabolism, Colony Count, Microbial, Enzymes/metabolism, Fermentation, Polysaccharides/*metabolism | Enzymology |
Enzymology | 2418781 | Immunochemical investigations of antigens isolated from Bacteroides ovatus strain ATCC 8483. | Beckmann I, Paelinck J, Zuijderduijn J, Sawicka-Grzelak A, Meisel-Mikolajczyk F | Antonie Van Leeuwenhoek | 10.1007/BF02439936 | 1985 | Antigens, Bacterial/*analysis, Bacteroides/*immunology, Carbohydrates/analysis, Epitopes/analysis, Hemagglutination Tests, Immune Sera, Immunoelectrophoresis | |
Pathogenicity | 2579527 | Properties of Bacteroides fragilis antigens with specificity B. | Sawicka-Grzelak A, Meisel-Mikolajczyk F | Acta Microbiol Pol | 1985 | Animals, Antigens, Bacterial/*immunology, Bacteroides fragilis/*immunology, Endotoxins/immunology, Hemagglutination Tests, Immunodiffusion, Rabbits, Serotyping | ||
Phylogeny | 19567576 | Bacteroides graminisolvens sp. nov., a xylanolytic anaerobe isolated from a methanogenic reactor treating cattle waste. | Nishiyama T, Ueki A, Kaku N, Watanabe K, Ueki K | Int J Syst Evol Microbiol | 10.1099/ijs.0.008268-0 | 2009 | Anaerobiosis, Animals, Bacterial Typing Techniques, Bacteroides/*classification/genetics/*isolation & purification/metabolism, Base Composition, Benzoquinones/analysis, Bioreactors/*microbiology, Carbohydrate Metabolism, Cattle, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hemin/metabolism, Hydrogen-Ion Concentration, Industrial Waste, Locomotion, Microscopy/methods, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Xylans/*metabolism | Metabolism |
Enzymology | 22051376 | Properties of BoAGE2, a second N-acetyl-D-glucosamine 2-epimerase from Bacteroides ovatus ATCC 8483. | Sola-Carvajal A, Sanchez-Carron G, Garcia-Garcia MI, Garcia-Carmona F, Sanchez-Ferrer A | Biochimie | 10.1016/j.biochi.2011.10.012 | 2011 | Amino Acid Sequence, Bacteroides/*enzymology, Base Sequence, Carbohydrate Epimerases/chemistry/*metabolism, Carrier Proteins/chemistry/*metabolism, DNA Primers, Electrophoresis, Polyacrylamide Gel, Kinetics, Models, Molecular, Molecular Sequence Data, Polymerase Chain Reaction, Renin/metabolism, Sequence Homology, Amino Acid | Metabolism |
Metabolism | 27872187 | Galactomannan Catabolism Conferred by a Polysaccharide Utilization Locus of Bacteroides ovatus: ENZYME SYNERGY AND CRYSTAL STRUCTURE OF A beta-MANNANASE. | Bagenholm V, Reddy SK, Bouraoui H, Morrill J, Kulcinskaja E, Bahr CM, Aurelius O, Rogers T, Xiao Y, Logan DT, Martens EC, Koropatkin NM, Stalbrand H | J Biol Chem | 10.1074/jbc.M116.746438 | 2016 | Bacteroides/*enzymology, Catalysis, Crystallography, X-Ray, Galactose/analogs & derivatives, Hydrolysis, Mannans/*metabolism, Polysaccharides/*metabolism, Protein Conformation, Substrate Specificity, beta-Mannosidase/*chemistry/*metabolism | Enzymology |
Pathogenicity | 27987846 | Differential growth of bowel commensal Bacteroides species on plant xylans of differing structural complexity. | Centanni M, Hutchison JC, Carnachan SM, Daines AM, Kelly WJ, Tannock GW, Sims IM | Carbohydr Polym | 10.1016/j.carbpol.2016.11.017 | 2016 | Bacteroides/*growth & development, Dysbiosis, Flax/*chemistry, Humans, Intestines/microbiology, Polysaccharides, Prebiotics, Symbiosis, Xylans/*chemistry | |
Phylogeny | 30663928 | Bacteroides ovatus ATCC 8483 monotherapy is superior to traditional fecal transplant and multi-strain bacteriotherapy in a murine colitis model. | Ihekweazu FD, Fofanova TY, Queliza K, Nagy-Szakal D, Stewart CJ, Engevik MA, Hulten KG, Tatevian N, Graham DY, Versalovic J, Petrosino JF, Kellermayer R | Gut Microbes | 10.1080/19490976.2018.1560753 | 2019 | Animals, Bacteria/classification/growth & development, Bacteroides/classification/growth & development/*physiology, Colitis/chemically induced/pathology/*therapy, Dextran Sulfate/toxicity, Disease Models, Animal, *Fecal Microbiota Transplantation, Feces/microbiology, Gastrointestinal Tract/microbiology/pathology, Inflammation/prevention & control, Male, Mice, Inbred C57BL, RNA, Ribosomal, 16S/genetics, Survival Analysis, Treatment Outcome | Pathogenicity |
Phylogeny | 33881983 | Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov., isolated from human faeces. | Ge Y, Zhang G, Yang J, Lai XH, Jin D, Lu S, Pu J, Huang Y, Luo X, Zheng H, Zhang X, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004772 | 2021 | Bacterial Typing Techniques, Bacteroides/*classification/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Humans, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Pathogenicity |
35087500 | Biochemical Characterization of Two Rhamnogalacturonan Lyases From Bacteroides ovatus ATCC 8483 With Preference for RG-I Substrates. | Wang W, Wang Y, Yi H, Liu Y, Zhang G, Zhang L, Mayo KH, Yuan Y, Zhou Y | Front Microbiol | 10.3389/fmicb.2021.799875 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
918 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1896) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1896 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
32784 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15588 | ||||
44813 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 4943) | https://www.ccug.se/strain?id=4943 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68380 | Automatically annotated from API rID32A | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
71237 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92789.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121472 | Curators of the CIP | Collection of Institut Pasteur (CIP 103756) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103756 |