Strain identifier
BacDive ID: 159163
Type strain: 
Species: Vibrio sp.
Strain Designation: IC18_D5
Strain history: <- W.M. Ihua, University College Cork, Microbiology; IC18_D5 <-
NCBI tax ID(s): 678 (species)
version 9.2 (current version)
General
@ref: 65986
BacDive-ID: 159163
DSM-Number: 107313
keywords: 16S sequence, Bacteria, mesophilic
description: Vibrio sp. IC18_D5 is a mesophilic bacterium that was isolated from decaying Ascophyllum nodosum.
NCBI tax id
- NCBI tax id: 678
- Matching level: species
strain history
- @ref: 65986
- history: <- W.M. Ihua, University College Cork, Microbiology; IC18_D5 <-
doi: 10.13145/bacdive159163.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio sp.
- full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)
synonyms
@ref synonym 20215 Beneckea 20215 Lucibacterium 20215 Allomonas
@ref: 65986
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio sp.
full scientific name: Vibrio sp.
strain designation: IC18_D5
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65986 | MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) | yes | https://mediadive.dsmz.de/medium/514f | Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 65986 | SEA WATER AGAR (DSMZ Medium 246) | yes | https://mediadive.dsmz.de/medium/246 | Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water |
culture temp
- @ref: 65986
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | + | hydrolysis |
| 68369 | 17634 | D-glucose | + | fermentation |
| 68369 | 27897 | tryptophan | + | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | gelatinase | - | |
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65986 | + | + | + | + | - | + | - | + | + | + | - | - | - | + | + | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 65986
- sample type: decaying Ascophyllum nodosum<\i>
- host species: Ascophyllum
- geographic location: Galway Bay (53° 14' 40'' N, 08° 58' 02'' W)
- country: Ireland
- origin.country: IRL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Algae | #Brown Algae |
| #Environmental | #Microbial community | #Decomposing algae |
Sequence information
16S sequences
- @ref: 65986
- description: Vibrio oceanisediminis strain IC18_D5 16S ribosomal RNA gene, partial sequence
- accession: KY225099.1
- length: 705
- database: nuccore
- NCBI tax ID: 1550030
External links
@ref: 65986
culture collection no.: DSM 107313
straininfo link
- @ref: 111666
- straininfo: 407620
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65986 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107313 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107313) | |
| 68369 | Automatically annotated from API 20NE | |||
| 111666 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407620.1 |