Strain identifier
BacDive ID: 159104
Type strain:
Species: Streptomyces filamentosus
Strain history: KCC S-0412 <-- IFO 12910 <-- SAJ <-- ISP 5122 <-- IAUR 4192.
NCBI tax ID(s): 67294 (species)
General
@ref: 65927
BacDive-ID: 159104
DSM-Number: 40122
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces filamentosus DSM 40122 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.
NCBI tax id
- NCBI tax id: 67294
- Matching level: species
strain history
@ref | history |
---|---|
65927 | <- E.B. Shirling, ISP <- J.O. Falcao de Morais, IAUR, 4192 |
67770 | KCC S-0412 <-- IFO 12910 <-- SAJ <-- ISP 5122 <-- IAUR 4192. |
doi: 10.13145/bacdive159104.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces filamentosus
- full scientific name: Streptomyces filamentosus Okami and Umezawa 1953 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptomyces roseosporus
@ref: 65927
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces filamentosus
full scientific name: Streptomyces filamentosus Okami and Umezawa 1953 emend. Lanoot et al. 2004
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 95.356 | |
69480 | 100 | positive |
colony morphology
@ref | colony color | medium used |
---|---|---|
69244 | Ivory (1014) | ISP 3 |
69244 | Ivory (1014) | ISP 5 |
69244 | Ivory (1014) | ISP 7 |
69244 | Sand yellow (1002) | ISP 2 |
69244 | Sand yellow (1002) | ISP 4 |
69244 | Sand yellow (1002) | ISP 6 |
69244 | Sand yellow (1002) | suter with tyrosine |
69244 | Sand yellow (1002) | suter without tyrosine |
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name |
---|---|---|---|---|
69244 | yes | Aerial mycelium | Grey white (9002) | ISP 2 |
69244 | yes | Aerial mycelium | Cream (9001) | ISP 3 |
69244 | yes | Aerial mycelium | Cream (9001) | ISP 4 |
69244 | yes | Aerial mycelium | Traffic white (9016) | ISP 5 |
69244 | no | Aerial mycelium | ISP 6 | |
69244 | yes | Aerial mycelium | Oyster white (1013) | ISP 7 |
69244 | no | Aerial mycelium | suter with tyrosine | |
69244 | yes | Aerial mycelium | Cream (9001) | suter without tyrosine |
pigmentation
@ref | production | name | color |
---|---|---|---|
69244 | no | Melanin | |
69244 | yes | soluble pigment | Sand yellow (1002) |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
65927 | https://www.dsmz.de/microorganisms/photos/DSM_40122.jpg | Medium 987 28°C | © Leibniz-Institut DSMZ |
69244 | DSM_40122_image3.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69244 | DSM_40122_image4.jpeg | Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
65927 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
65927 | ISP2 MEDIUM (DSMZ Medium 987) | yes | https://mediadive.dsmz.de/medium/987 | Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65927 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | yes | 99.432 |
69481 | yes | 100 |
halophily
- @ref: 69244
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69244 | 22599 | arabinose | + | growth |
69244 | 62968 | cellulose | - | growth |
69244 | 28757 | fructose | - | growth |
69244 | 17234 | glucose | + | growth |
69244 | 17268 | inositol | - | growth |
69244 | 37684 | mannose | - | growth |
69244 | 16634 | raffinose | - | growth |
69244 | 26546 | rhamnose | + | growth |
69244 | 17992 | sucrose | - | growth |
69244 | 18222 | xylose | + | growth |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69244 | + | - | - | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69244 | + | +/- | +/- | + | + | + | +/- | + | + | + | + | - | + | - | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 65927
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 65927
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Streptomyces filamentosus gene for 16S rRNA, partial sequence, strain: NBRC 12910
- accession: AB184238
- length: 1457
- database: ena
- NCBI tax ID: 67294
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces filamentosus strain ATCC 23958 | 67294.3 | complete | patric | 67294 |
67770 | Streptomyces filamentosus ATCC 23958 | GCA_008634015 | contig | ncbi | 67294 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 88.992 | no |
anaerobic | no | 99.137 | no |
halophile | no | 93.964 | no |
spore-forming | yes | 95.065 | no |
glucose-util | yes | 89.2 | yes |
thermophile | no | 99.178 | no |
flagellated | no | 97.439 | no |
motile | no | 94.19 | no |
aerobic | yes | 91.365 | no |
glucose-ferment | no | 84.474 | no |
External links
@ref: 65927
culture collection no.: DSM 40122, CBS 941.68, ATCC 23958, IAUR 4192, IFO 12910, ISP 5122, JCM 4412, RIA 1125, NBRC 12910, BCRC 13771, CGMCC 4.1790, CGMCC 4.1871, CGMCC 4.2073, KCTC 9568, NCIMB 13008, NRRL B-5411
straininfo link
- @ref: 111612
- straininfo: 77064
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
65927 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40122 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40122) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69244 | Wink, J. | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | https://cdn.dsmz.de/wink/DSM%2040122.pdf | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
111612 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID77064.1 |