Strain identifier

BacDive ID: 159104

Type strain: No

Species: Streptomyces filamentosus

Strain history: KCC S-0412 <-- IFO 12910 <-- SAJ <-- ISP 5122 <-- IAUR 4192.

NCBI tax ID(s): 67294 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65927

BacDive-ID: 159104

DSM-Number: 40122

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces filamentosus DSM 40122 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

  • NCBI tax id: 67294
  • Matching level: species

strain history

@refhistory
65927<- E.B. Shirling, ISP <- J.O. Falcao de Morais, IAUR, 4192
67770KCC S-0412 <-- IFO 12910 <-- SAJ <-- ISP 5122 <-- IAUR 4192.

doi: 10.13145/bacdive159104.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces filamentosus
  • full scientific name: Streptomyces filamentosus Okami and Umezawa 1953 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Streptomyces roseosporus

@ref: 65927

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces filamentosus

full scientific name: Streptomyces filamentosus Okami and Umezawa 1953 emend. Lanoot et al. 2004

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.356
69480100positive

colony morphology

@refcolony colormedium used
69244Ivory (1014)ISP 3
69244Ivory (1014)ISP 5
69244Ivory (1014)ISP 7
69244Sand yellow (1002)ISP 2
69244Sand yellow (1002)ISP 4
69244Sand yellow (1002)ISP 6
69244Sand yellow (1002)suter with tyrosine
69244Sand yellow (1002)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69244yesAerial myceliumGrey white (9002)ISP 2
69244yesAerial myceliumCream (9001)ISP 3
69244yesAerial myceliumCream (9001)ISP 4
69244yesAerial myceliumTraffic white (9016)ISP 5
69244noAerial myceliumISP 6
69244yesAerial myceliumOyster white (1013)ISP 7
69244noAerial myceliumsuter with tyrosine
69244yesAerial myceliumCream (9001)suter without tyrosine

pigmentation

@refproductionnamecolor
69244noMelanin
69244yessoluble pigmentSand yellow (1002)

multimedia

@refmultimedia contentcaptionintellectual property rights
65927https://www.dsmz.de/microorganisms/photos/DSM_40122.jpgMedium 987 28°C© Leibniz-Institut DSMZ
69244DSM_40122_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69244DSM_40122_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65927GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
65927ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65927positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes99.432
69481yes100

halophily

  • @ref: 69244
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6924422599arabinose+growth
6924462968cellulose-growth
6924428757fructose-growth
6924417234glucose+growth
6924417268inositol-growth
6924437684mannose-growth
6924416634raffinose-growth
6924426546rhamnose+growth
6924417992sucrose-growth
6924418222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69244+--+-++-+-++-------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69244++/-+/-++++/-++++-+-++---

Isolation, sampling and environmental information

isolation

  • @ref: 65927
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 65927
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Streptomyces filamentosus gene for 16S rRNA, partial sequence, strain: NBRC 12910
  • accession: AB184238
  • length: 1457
  • database: ena
  • NCBI tax ID: 67294

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces filamentosus strain ATCC 2395867294.3completepatric67294
67770Streptomyces filamentosus ATCC 23958GCA_008634015contigncbi67294

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes88.992no
anaerobicno99.137no
halophileno93.964no
spore-formingyes95.065no
glucose-utilyes89.2yes
thermophileno99.178no
flagellatedno97.439no
motileno94.19no
aerobicyes91.365no
glucose-fermentno84.474no

External links

@ref: 65927

culture collection no.: DSM 40122, CBS 941.68, ATCC 23958, IAUR 4192, IFO 12910, ISP 5122, JCM 4412, RIA 1125, NBRC 12910, BCRC 13771, CGMCC 4.1790, CGMCC 4.1871, CGMCC 4.2073, KCTC 9568, NCIMB 13008, NRRL B-5411

straininfo link

  • @ref: 111612
  • straininfo: 77064

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65927Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-40122Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40122)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69244Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2040122.pdf
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111612Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID77064.1