Strain identifier

BacDive ID: 159088

Type strain: Yes

Species: Gallintestinimicrobium propionicum

Strain Designation: Sanger_16

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_16 <- H. Browne {2014}

NCBI tax ID(s): 1869227 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 8.1 (current version)

General

@ref: 65911

BacDive-ID: 159088

DSM-Number: 102825

keywords: genome sequence, Bacteria, mesophilic

description: Gallintestinimicrobium propionicum Sanger_16 is a mesophilic bacterium that was isolated from Faeces from healthy human.

NCBI tax id

  • NCBI tax id: 1869227
  • Matching level: species

strain history

  • @ref: 65911
  • history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_16 <- H. Browne {2014}

doi: 10.13145/bacdive159088.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Gallintestinimicrobium
  • species: Gallintestinimicrobium propionicum
  • full scientific name: Gallintestinimicrobium propionicum Hitch et al. 2022

@ref: 65911

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Gallintestinimicrobium

species: Gallintestinimicrobium propionicum

full scientific name: Gallintestinimicrobium propionicum

strain designation: Sanger_16

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65911PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)yeshttps://mediadive.dsmz.de/medium/104cName: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
65911CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)yeshttps://mediadive.dsmz.de/medium/110aName: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

culture temp

  • @ref: 65911
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65911
  • sample type: Faeces from healthy human
  • geographic location: Cambridgeshire, Hinxton
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Gallintestinimicrobium propionicum Sanger_16
  • accession: GCA_025567525
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2981770

GC content

  • @ref: 65911
  • GC-content: 47.4
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.05no
flagellatedno94.341no
gram-positiveyes86.575no
anaerobicyes99.336no
aerobicno98.593no
halophileno73.099no
spore-formingno54.11no
glucose-fermentyes75.885no
thermophileno98.864yes
glucose-utilyes89.06no

External links

@ref: 65911

culture collection no.: DSM 102825, JCM 34984

straininfo link

  • @ref: 111598
  • straininfo: 398180

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65911Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102825Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102825)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
111598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398180.1