Strain identifier
BacDive ID: 159051
Type strain: 
Species: Marinitoga lauensis
Strain Designation: LG1
Strain history: S. L'Haridon; Univ. of Brest, France; LG1.
NCBI tax ID(s): 2201189 (species)
version 8.1 (current version)
General
@ref: 65874
BacDive-ID: 159051
DSM-Number: 106824
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Marinitoga lauensis LG1 is a thermophilic bacterium that was isolated from hydrothermal vent chimney samples.
NCBI tax id
- NCBI tax id: 2201189
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65874 | <- S. L ´ Haridon, Institut Universitaire Européen de la Mer, Plouzané, France; LG1 <- S. L ´ Haridon {2016} |
| 67770 | S. L'Haridon; Univ. of Brest, France; LG1. |
doi: 10.13145/bacdive159051.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Petrotogales
- family: Petrotogaceae
- genus: Marinitoga
- species: Marinitoga lauensis
- full scientific name: Marinitoga lauensis L'Haridon et al. 2021
@ref: 65874
domain: Bacteria
phylum: Thermotogae
class: Thermotogae
order: Petrotogales
family: Petrotogaceae
genus: Marinitoga
species: Marinitoga lauensis
full scientific name: Marinitoga lauensis L'Haridon et al. 2019
strain designation: LG1
type strain: no
Culture and growth conditions
culture medium
- @ref: 65874
- name: CAMINICELLA MEDIUM (DSMZ Medium 964)
- growth: yes
- link: https://mediadive.dsmz.de/medium/964
- composition: Name: CAMINICELLA MEDIUM (DSMZ Medium 964) Composition: Sea Salt 30.0 g/l Sulfur 12.0 g/l PIPES buffer 6.05 g/l D-Glucose 5.0 g/l Peptone 1.0 g/l Yeast extract 0.5 g/l Na2S x 9 H2O 0.5 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65874 | positive | growth | 55 | thermophilic |
| 67770 | positive | growth | 55 | thermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 65874 | hydrothermal vent chimney samples | deep sea hydrothermal vent field Mariner | Tonga | TON | Australia and Oceania | -20.1667 | -176.6 |
| 67770 | Deep-sea hydrothermal chimney located the deep-sea hydrothermal vent field Mariner, Eastern Las Spreading Center, at 1913 m deep |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Geologic |
| #Environmental | #Aquatic | #Hydrothermal vent |
Sequence information
16S sequences
- @ref: 65874
- description: Marinitoga sp. LG1 16S ribosomal RNA gene, partial sequence
- accession: MH457605
- length: 1445
- database: ena
- NCBI tax ID: 2201189
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinitoga lauensis LG1 | 2891158330 | draft | img | 2201189 |
| 67770 | Marinitoga lauensis LG1 | GCA_004135675 | contig | ncbi | 2201189 |
GC content
- @ref: 65874
- GC-content: 27.9
- method: sequence analysis
External links
@ref: 65874
culture collection no.: DSM 106824, JCM 32613
straininfo link
- @ref: 111565
- straininfo: 399902
literature
- topic: Phylogeny
- Pubmed-ID: 30948139
- title: Marinitoga lauensis sp. nov., a novel deep-sea hydrothermal vent thermophilic anaerobic heterotroph with a prophage.
- authors: L'Haridon S, Gouhier L, John ES, Reysenbach AL
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2019.02.006
- year: 2019
- mesh: Bacteria, Anaerobic/*classification/*physiology/virology, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Heterotrophic Processes, Hot Temperature, Hydrogen-Ion Concentration, Hydrothermal Vents/*microbiology, Pacific Ocean, *Phylogeny, Prophages/*genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Sulfur/metabolism
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65874 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106824 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106824) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 111565 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399902.1 |