Strain identifier
BacDive ID: 159042
Type strain: 
Species: Olsenella porci
Strain Designation: CA-Schmier-601-WT1, CA-Schmier-601-WT-1
Strain history: B. Abt; DSMZ, Germany; DSM 105246 (=CA-Schmier-601-WT-1) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2652279 (species)
version 9.3 (current version)
General
@ref: 65865
BacDive-ID: 159042
DSM-Number: 105246
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Olsenella porci CA-Schmier-601-WT1 is a mesophilic bacterium that was isolated from pig, WT, 1 year old, feces.
NCBI tax id
- NCBI tax id: 2652279
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65865 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; |
| 67770 | B. Abt; DSMZ, Germany; DSM 105246 (=CA-Schmier-601-WT-1) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive159042.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Coriobacteriales
- family: Atopobiaceae
- genus: Olsenella
- species: Olsenella porci
- full scientific name: Olsenella porci Wylensek et al. 2021
@ref: 65865
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Coriobacteriales
family: Atopobiaceae
genus: Olsenella
species: Olsenella porci
full scientific name: Olsenella porci
strain designation: CA-Schmier-601-WT1, CA-Schmier-601-WT-1
type strain: yes
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 90.125
Culture and growth conditions
culture medium
- @ref: 65865
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 65865 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 93.1
spore formation
- @ref: 125439
- spore formation: no
- confidence: 95.1
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65865 | pig, WT, 1 year old, feces | Kranzberg (Bavaria) | Germany | DEU | Europe |
| 67770 | Feces of a German Landrace pig | Freising | Germany | DEU | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_122858.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_150;96_48244;97_62045;98_82630;99_122858&stattab=map
- Last taxonomy: Olsenella porci subclade
- 16S sequence: MN537480
- Sequence Identity:
- Total samples: 2258
- soil counts: 126
- aquatic counts: 225
- animal counts: 1870
- plant counts: 37
Sequence information
16S sequences
- @ref: 65865
- description: Olsenella porci strain CA-Schmier-601-WT-1 16S ribosomal RNA gene, partial sequence
- accession: MN537480
- length: 1463
- database: nuccore
- NCBI tax ID: 2652279
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Olsenella porci CA-Schmier-601-WT-1 | GCA_009695875 | contig | ncbi | 2652279 |
| 66792 | Olsenella sp. CA-Schmier-601-WT-1 | 2605787.3 | wgs | patric | 2652279 |
GC content
- @ref: 67770
- GC-content: 64.9
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 77.704 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 87.583 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 74.307 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 95.384 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.679 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.125 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 95.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 51.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 68.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 93.1 |
External links
@ref: 65865
culture collection no.: DSM 105246, JCM 34369
straininfo link
- @ref: 111556
- straininfo: 400942
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65865 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105246 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105246) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111556 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400942.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |