Strain identifier

BacDive ID: 159

Type strain: Yes

Species: Actinomyces gerencseriae

Strain Designation: 2-606-032

Culture col. no.: DSM 6844, ATCC 23860, CDC W838, CIP 105418, JCM 12963, VPI 12594

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 2852

BacDive-ID: 159

DSM-Number: 6844

keywords: gram-positive, mesophilic, microaerophile, Bacteria, 16S sequence, genome sequence, colony-forming

description: Actinomyces gerencseriae 2-606-032 is a microaerophile, mesophilic, gram-positive bacterium that forms circular colonies and was isolated from human, parotid abscess.

strain history: <- ATCC <- L. Georg, CDC W838 <- L.A. Weed, 2-606-032

doi: 10.13145/bacdive159.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces gerencseriae
  • full scientific name: Actinomyces gerencseriae Johnson et al. 1990

@ref: 2852

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces gerencseriae

full scientific name: Actinomyces gerencseriae Johnson et al. 1990

strain designation: 2-606-032

type strain: yes

Morphology

cell morphology

  • @ref: 23355
  • gram stain: positive
  • motility: no

colony morphology

  • @ref: 23355
  • colony size: 0.2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: blood agar and peptone-yeast extract-glucose broth

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2852BHI/2 MEDIUM (DSMZ Medium 217), microaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium217.pdf
23355blood agaryes
41697MEDIUM 258 - for Actinomyces gerencseriaeyesDistilled water make up to (1000.000 ml);Glucose (5.000 g);Yeast extract(5.000 g);Brain heart infusion agar (52.000 g);Casein hydrolysate acid hydrolysed vitamine-free (10.000 g)

culture temp

@refgrowthtypetemperaturerange
2852positivegrowth37mesophilic
41697positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2852microaerophile
23355anaerobe

spore formation

  • @ref: 23355
  • spore formation: no

murein

  • @ref: 2852
  • murein short key: A21.11
  • type: A5ß L-Orn-L-Lys-D-Glu

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2335522599arabinose-builds acid from
2335528757fructose+builds acid from
2335529864mannitol+builds acid from
2335516634raffinose+builds acid from
2335517108D-arabinose+fermentation

Isolation, sampling and environmental information

isolation

  • @ref: 2852
  • sample type: human, parotid abscess

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Abscess
#Host Body-Site#Organ#Ear

Safety information

risk assessment

  • @ref: 2852
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinomyces gerencseriae 16S ribosomal RNA gene, partial sequenceAF058050282ena52769
20218A.gerencseriae 16S rDNAX804141415ena52769

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomyces gerencseriae DSM 6844GCA_000429265scaffoldncbi1120943
66792Actinomyces gerencseriae DSM 68441120943.3wgspatric1120943
66792Actinomyces gerencseriae DSM 68442524023137permanentimg1120943

GC content

@refGC-contentmethod
285270.0thermal denaturation, midpoint method (Tm)
2335570.0

External links

@ref: 2852

culture collection no.: DSM 6844, ATCC 23860, CDC W838, CIP 105418, JCM 12963, VPI 12594

straininfo link

@refpassport
20218http://www.straininfo.net/strains/126878
20218http://www.straininfo.net/strains/103315
20218http://www.straininfo.net/strains/103316
20218http://www.straininfo.net/strains/148301
20218http://www.straininfo.net/strains/534188

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2852Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6844)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6844
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23355J. L. Johnson, Lillian V. H. Moore, Beverly Kaneko, W. E. C. Moore10.1099/00207713-40-3-273Actinomyces georgiae sp. nov., Actinomyces gerencseriae sp. nov., Designation of Two Genospecies of Actinomyces naeslundii, and Inclusion of A. naeslundii serotypes II and III and Actinomyces viscosus serotype II in A. naeslundii Genospecies 2IJSEM 40: 273-286 1990
41697Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17436
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)