Strain identifier

BacDive ID: 158989

Type strain: Yes

Species: Lentilactobacillus buchneri subsp. silagei

Strain history: M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; SG162.

NCBI tax ID(s): 2737512 (subspecies)

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General

@ref: 65812

BacDive-ID: 158989

DSM-Number: 107969

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lentilactobacillus buchneri subsp. silagei DSM 107969 is a mesophilic bacterium that was isolated from fermented rice grain.

NCBI tax id

  • NCBI tax id: 2737512
  • Matching level: subspecies

strain history

@refhistory
65812<- M. Tohno, National Agriculture and Food Res. Org. (NARO), Tochigi, Japan; strain SG162
67770M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; SG162.

doi: 10.13145/bacdive158989.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lentilactobacillus
  • species: Lentilactobacillus buchneri subsp. silagei
  • full scientific name: Lentilactobacillus buchneri subsp. silagei (Tanizawa et al. 2020) Liu and Gu 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus buchneri subsp. silagei

@ref: 65812

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lentilactobacillus

species: Lentilactobacillus buchneri subsp. silagei

full scientific name: Lentilactobacillus buchneri subsp. silagei (Tanizawa et al. 2020) Liu and Gu 2020

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 65812
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65812positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 65812
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65812fermented rice grainTochigiJapanJPNAsia
67770Rice grain silage in Japan

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Host#Plants#Shrub (Scrub)
#Engineered#Food production#Vegetable (incl. Grains)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3539.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_367;97_831;98_967;99_3539&stattab=map
  • Last taxonomy: Lentilactobacillus
  • 16S sequence: LC507198
  • Sequence Identity:
  • Total samples: 4525
  • soil counts: 442
  • aquatic counts: 432
  • animal counts: 3255
  • plant counts: 396

Sequence information

16S sequences

  • @ref: 65812
  • description: Lactobacillus buchneri subsp. silagei SG162 gene for 16S ribosomal RNA, partial sequence
  • accession: LC507198
  • length: 1497
  • database: ena
  • NCBI tax ID: 2737512

Genome sequences

  • @ref: 67770
  • description: Lentilactobacillus buchneri subsp. silagei SG162
  • accession: GCA_013167835
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 2737512

GC content

  • @ref: 67770
  • GC-content: 44.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.545no
gram-positiveyes97.856no
anaerobicno94.395no
aerobicno92.29no
halophileyes93.082no
spore-formingno92.505no
glucose-utilyes89.314no
thermophileno98.983yes
motileno95.989no
glucose-fermentyes87.566no

External links

@ref: 65812

culture collection no.: DSM 107969, JCM 32599, SG 162

straininfo link

  • @ref: 111505
  • straininfo: 398402

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65812Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107969Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107969)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111505Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398402.1