Strain identifier
BacDive ID: 158989
Type strain:
Species: Lentilactobacillus buchneri subsp. silagei
Strain history: M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; SG162.
NCBI tax ID(s): 2737512 (subspecies)
General
@ref: 65812
BacDive-ID: 158989
DSM-Number: 107969
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lentilactobacillus buchneri subsp. silagei DSM 107969 is a mesophilic bacterium that was isolated from fermented rice grain.
NCBI tax id
- NCBI tax id: 2737512
- Matching level: subspecies
strain history
@ref | history |
---|---|
65812 | <- M. Tohno, National Agriculture and Food Res. Org. (NARO), Tochigi, Japan; strain SG162 |
67770 | M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; SG162. |
doi: 10.13145/bacdive158989.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lentilactobacillus
- species: Lentilactobacillus buchneri subsp. silagei
- full scientific name: Lentilactobacillus buchneri subsp. silagei (Tanizawa et al. 2020) Liu and Gu 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus buchneri subsp. silagei
@ref: 65812
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lentilactobacillus
species: Lentilactobacillus buchneri subsp. silagei
full scientific name: Lentilactobacillus buchneri subsp. silagei (Tanizawa et al. 2020) Liu and Gu 2020
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65812
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65812 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
murein
- @ref: 65812
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
65812 | fermented rice grain | Tochigi | Japan | JPN | Asia |
67770 | Rice grain silage in Japan |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Fermented |
#Host | #Plants | #Shrub (Scrub) |
#Engineered | #Food production | #Vegetable (incl. Grains) |
taxonmaps
- @ref: 69479
- File name: preview.99_3539.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_367;97_831;98_967;99_3539&stattab=map
- Last taxonomy: Lentilactobacillus
- 16S sequence: LC507198
- Sequence Identity:
- Total samples: 4525
- soil counts: 442
- aquatic counts: 432
- animal counts: 3255
- plant counts: 396
Sequence information
16S sequences
- @ref: 65812
- description: Lactobacillus buchneri subsp. silagei SG162 gene for 16S ribosomal RNA, partial sequence
- accession: LC507198
- length: 1497
- database: ena
- NCBI tax ID: 2737512
Genome sequences
- @ref: 67770
- description: Lentilactobacillus buchneri subsp. silagei SG162
- accession: GCA_013167835
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2737512
GC content
- @ref: 67770
- GC-content: 44.1
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 98.545 | no |
gram-positive | yes | 97.856 | no |
anaerobic | no | 94.395 | no |
aerobic | no | 92.29 | no |
halophile | yes | 93.082 | no |
spore-forming | no | 92.505 | no |
glucose-util | yes | 89.314 | no |
thermophile | no | 98.983 | yes |
motile | no | 95.989 | no |
glucose-ferment | yes | 87.566 | no |
External links
@ref: 65812
culture collection no.: DSM 107969, JCM 32599, SG 162
straininfo link
- @ref: 111505
- straininfo: 398402
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
65812 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107969 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107969) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
111505 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398402.1 |