Strain identifier
BacDive ID: 158986
Type strain: 
Species: Ligilactobacillus salivarius
Strain Designation: WCA-383-APC-5E
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-383-APC-5E
NCBI tax ID(s): 1624 (species)
General
@ref: 65809
BacDive-ID: 158986
DSM-Number: 105842
keywords: 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus salivarius WCA-383-APC-5E is a mesophilic bacterium that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 1624
- Matching level: species
strain history
- @ref: 65809
- history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-383-APC-5E
doi: 10.13145/bacdive158986.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus salivarius
- full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus salivarius subsp. salicinius 20215 Lactobacillus salivarius
@ref: 65809
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus salivarius
full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
strain designation: WCA-383-APC-5E
type strain: no
Culture and growth conditions
culture medium
- @ref: 65809
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 65809
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65809
- sample type: feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Munich
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_805.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_805&stattab=map
- Last taxonomy: Lactobacillus
- 16S sequence: MN537500
- Sequence Identity:
- Total samples: 97415
- soil counts: 4210
- aquatic counts: 4168
- animal counts: 87492
- plant counts: 1545
Sequence information
16S sequences
- @ref: 65809
- description: Lactobacillus sp. strain DSM 105842 16S ribosomal RNA gene, partial sequence
- accession: MN537500
- length: 1491
- database: ena
- NCBI tax ID: 1591
External links
@ref: 65809
culture collection no.: DSM 105842
straininfo link
- @ref: 111502
- straininfo: 400279
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65809 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105842 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105842) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111502 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400279.1 |