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Strain identifier

BacDive ID: 158986

Type strain: No

Species: Ligilactobacillus salivarius

Strain Designation: WCA-383-APC-5E

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-383-APC-5E

NCBI tax ID(s): 1624 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65809

BacDive-ID: 158986

DSM-Number: 105842

keywords: 16S sequence, Bacteria, mesophilic

description: Ligilactobacillus salivarius WCA-383-APC-5E is a mesophilic bacterium that was isolated from feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

NCBI tax id

  • NCBI tax id: 1624
  • Matching level: species

strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-383-APC-5E

doi: 10.13145/bacdive158986.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus salivarius
  • full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus salivarius subsp. salicinius
    20215Lactobacillus salivarius

@ref: 65809

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus salivarius

full scientific name: Ligilactobacillus salivarius (Rogosa et al. 1953) Zheng et al. 2020

strain designation: WCA-383-APC-5E

type strain: no

Culture and growth conditions

culture medium

  • @ref: 65809
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 65809
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65809
  • sample type: feces; pig, 5 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
  • geographic location: Munich
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_805.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_146;97_157;98_175;99_805&stattab=map
  • Last taxonomy: Lactobacillus
  • 16S sequence: MN537500
  • Sequence Identity:
  • Total samples: 97415
  • soil counts: 4210
  • aquatic counts: 4168
  • animal counts: 87492
  • plant counts: 1545

Sequence information

16S sequences

  • @ref: 65809
  • description: Lactobacillus sp. strain DSM 105842 16S ribosomal RNA gene, partial sequence
  • accession: MN537500
  • length: 1491
  • database: ena
  • NCBI tax ID: 1591

External links

@ref: 65809

culture collection no.: DSM 105842

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65809Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105842Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105842)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/