Strain identifier
BacDive ID: 158984
Type strain:
Species: Ligilactobacillus agilis
Strain Designation: WCA-389-WT-5H1
Strain history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5H1
NCBI tax ID(s): 1601 (species)
General
@ref: 65807
BacDive-ID: 158984
DSM-Number: 102821
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Ligilactobacillus agilis WCA-389-WT-5H1 is a mesophilic bacterium that was isolated from feces; pig, 3.5 month old, wild type.
NCBI tax id
- NCBI tax id: 1601
- Matching level: species
strain history
- @ref: 65807
- history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5H1
doi: 10.13145/bacdive158984.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus agilis
- full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus agilis
@ref: 65807
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus agilis
full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
strain designation: WCA-389-WT-5H1
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
65807 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
65807 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
culture temp
- @ref: 65807
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65807
- sample type: feces; pig, 3.5 month old, wild type
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_6918.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
- Last taxonomy: Ligilactobacillus agilis subclade
- 16S sequence: MN537457
- Sequence Identity:
- Total samples: 41290
- soil counts: 1642
- aquatic counts: 1961
- animal counts: 36795
- plant counts: 892
Safety information
risk assessment
- @ref: 65807
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 65807
- description: Lactobacillus agilis strain DSM 102821 16S ribosomal RNA gene, partial sequence
- accession: MN537457
- length: 1511
- database: ena
- NCBI tax ID: 1601
Genome sequences
- @ref: 66792
- description: Ligilactobacillus agilis WCA-389-WT-5H1
- accession: GCA_012843665
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1601
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 55.299 | no |
flagellated | no | 87.257 | no |
gram-positive | yes | 93.764 | no |
anaerobic | no | 90.74 | no |
aerobic | no | 97.506 | no |
halophile | yes | 80.945 | no |
spore-forming | no | 91.161 | no |
thermophile | no | 96.274 | no |
glucose-util | yes | 92.056 | no |
glucose-ferment | yes | 89.92 | no |
External links
@ref: 65807
culture collection no.: DSM 102821
straininfo link
- @ref: 111500
- straininfo: 400520
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
65807 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102821 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102821) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
111500 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400520.1 |