Strain identifier

BacDive ID: 158984

Type strain: No

Species: Ligilactobacillus agilis

Strain Designation: WCA-389-WT-5H1

Strain history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5H1

NCBI tax ID(s): 1601 (species)

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General

@ref: 65807

BacDive-ID: 158984

DSM-Number: 102821

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Ligilactobacillus agilis WCA-389-WT-5H1 is a mesophilic bacterium that was isolated from feces; pig, 3.5 month old, wild type.

NCBI tax id

  • NCBI tax id: 1601
  • Matching level: species

strain history

  • @ref: 65807
  • history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; WCA-389-WT-5H1

doi: 10.13145/bacdive158984.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Ligilactobacillus
  • species: Ligilactobacillus agilis
  • full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus agilis

@ref: 65807

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Ligilactobacillus

species: Ligilactobacillus agilis

full scientific name: Ligilactobacillus agilis (Weiss et al. 1982) Zheng et al. 2020

strain designation: WCA-389-WT-5H1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65807MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
65807WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 65807
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65807
  • sample type: feces; pig, 3.5 month old, wild type
  • geographic location: Kranzberg (Bavaria)
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6918.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3250;97_3988;98_5089;99_6918&stattab=map
  • Last taxonomy: Ligilactobacillus agilis subclade
  • 16S sequence: MN537457
  • Sequence Identity:
  • Total samples: 41290
  • soil counts: 1642
  • aquatic counts: 1961
  • animal counts: 36795
  • plant counts: 892

Safety information

risk assessment

  • @ref: 65807
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65807
  • description: Lactobacillus agilis strain DSM 102821 16S ribosomal RNA gene, partial sequence
  • accession: MN537457
  • length: 1511
  • database: ena
  • NCBI tax ID: 1601

Genome sequences

  • @ref: 66792
  • description: Ligilactobacillus agilis WCA-389-WT-5H1
  • accession: GCA_012843665
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1601

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes55.299no
flagellatedno87.257no
gram-positiveyes93.764no
anaerobicno90.74no
aerobicno97.506no
halophileyes80.945no
spore-formingno91.161no
thermophileno96.274no
glucose-utilyes92.056no
glucose-fermentyes89.92no

External links

@ref: 65807

culture collection no.: DSM 102821

straininfo link

  • @ref: 111500
  • straininfo: 400520

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65807Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102821Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102821)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111500Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400520.1