Strain identifier
BacDive ID: 158947
Type strain: 
Species: Escherichia coli
Strain Designation: McC-252-APC-1B1
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; McC-252-APC-1B1
NCBI tax ID(s): 562 (species)
version 9.3 (current version)
General
@ref: 65770
BacDive-ID: 158947
DSM-Number: 106279
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, human pathogen
description: Escherichia coli McC-252-APC-1B1 is a mesophilic, Gram-negative human pathogen that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 65770
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; McC-252-APC-1B1
doi: 10.13145/bacdive158947.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 65770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: McC-252-APC-1B1
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 99.75
Culture and growth conditions
culture medium
- @ref: 65770
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 65770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 65770
- sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_8.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_7;99_8&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: MN537510
- Sequence Identity:
- Total samples: 97630
- soil counts: 2111
- aquatic counts: 5613
- animal counts: 88071
- plant counts: 1835
Safety information
risk assessment
- @ref: 65770
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 65770
- description: Enterobacteriaceae bacterium strain DSM 106279 16S ribosomal RNA gene, partial sequence
- accession: MN537510
- length: 1496
- database: nuccore
- NCBI tax ID: 1849603
Genome sequences
- @ref: 66792
- description: Enterobacteriaceae bacterium strain McC-252-APC-1B1 (aerob) strain McC-252-APC-1B1 (aerob) strain McC-252-APC-1B1 (aerob)
- accession: 1849603.16
- assembly level: wgs
- database: patric
- NCBI tax ID: 1849603
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.75 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.456 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.948 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 59.461 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 75.356 | no |
External links
@ref: 65770
culture collection no.: DSM 106279
straininfo link
- @ref: 111464
- straininfo: 403842
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65770 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106279 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106279) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111464 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403842.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |