Strain identifier
BacDive ID: 158922
Type strain: 
Species: Mogibacterium kristiansenii
Strain Designation: WCA-MUC-591-APC-4B
Strain history: B. Abt; DSMZ, Germany; DSM 106282 (=WCA-MUC-591-APC-4B) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2606708 (species)
version 9.3 (current version)
General
@ref: 65744
BacDive-ID: 158922
DSM-Number: 106282
keywords: genome sequence, 16S sequence, Bacteria, obligate anaerobe, mesophilic, Gram-positive, rod-shaped
description: Mogibacterium kristiansenii WCA-MUC-591-APC-4B is an obligate anaerobe, mesophilic, Gram-positive bacterium that was isolated from feces; pig ,7 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 2606708
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65744 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-MUC-591-APC-4B |
| 67770 | B. Abt; DSMZ, Germany; DSM 106282 (=WCA-MUC-591-APC-4B) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive158922.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Anaerovoracaceae
- genus: Mogibacterium
- species: Mogibacterium kristiansenii
- full scientific name: Mogibacterium kristiansenii Wylensek et al. 2021
@ref: 65744
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Mogibacteriaceae
genus: Mogibacterium
species: Mogibacterium kristiansenii
full scientific name: Mogibacterium kristiansenii
strain designation: WCA-MUC-591-APC-4B
type strain: yes
Morphology
cell morphology
- @ref: 69645
- gram stain: positive
- cell length: 1-1.5 µm
- cell shape: rod-shaped
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65744 | GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713) | yes | https://mediadive.dsmz.de/medium/1713 | Name: GAM Broth (Gifu Anaerobic Medium Broth) (DSMZ Medium 1713; with strain-specific modifications) Composition: GAM Broth powder 59.0 g/l Sodium pyruvate 11.004 g/l Distilled water |
| 69645 | Gifu Anaerobic Medium, modi?ed | yes | ||
| 69645 | Brain Heart Infusion (BHI) agar | yes | ||
| 69645 | Wilkins-Chalgren Anaerobe broth | yes | supplemented with L-cysteine and DTT (0.05% and 0.02% (w/v), respectively) |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 65744 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
| 69645 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 69645 | obligate anaerobe | |
| 125439 | anaerobe | 99.3 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture composition | enrichment culture duration | enrichment culture temperature | isolation procedure |
|---|---|---|---|---|---|---|---|---|---|---|
| 65744 | feces; pig ,7 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein | Kranzberg (Bavaria) | Germany | DEU | Europe | |||||
| 67770 | Feces of an APC1311/+ pig | Freising | Germany | DEU | Europe | |||||
| 69645 | Pig feces | Thalhausen, Bavaria | Germany | DEU | Europe | Wilkins-Chalgren Anaerobe broth | supplemented with 18.5 g mucin | 7-10 days | 37 | anaerobic |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_21420.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_145;96_10842;97_13130;98_16157;99_21420&stattab=map
- Last taxonomy: Mogibacterium
- 16S sequence: MN537512
- Sequence Identity:
- Total samples: 65584
- soil counts: 1164
- aquatic counts: 3969
- animal counts: 60044
- plant counts: 407
Sequence information
16S sequences
- @ref: 65744
- description: Mogibacterium kristiansenii strain WCA-MUC-591-APC-4B 16S ribosomal RNA gene, partial sequence
- accession: MN537512
- length: 1393
- database: nuccore
- NCBI tax ID: 2652294
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mogibacterium kristiansenii WCA-MUC-591-APC-4B | GCA_009695905 | contig | ncbi | 2606708 |
| 66792 | Clostridiales Family XIII bacterium WCA-MUC-591-APC-4B | 2606708.3 | wgs | patric | 2606708 |
| 69645 | Whole genome shotgun | VUNA00000000 | ncbi | 2606708 |
GC content
- @ref: 67770
- GC-content: 50
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.494 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.148 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 68.678 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.402 | yes |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 88.449 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 86.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 76.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 81.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 79.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 99.3 |
External links
@ref: 65744
culture collection no.: DSM 106282, JCM 34371
straininfo link
- @ref: 111441
- straininfo: 407523
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65744 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106282 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106282) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69645 | David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel | A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity | 10.1038/s41467-020-19929-w | |
| 111441 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407523.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |