Strain identifier
BacDive ID: 158896
Type strain: 
Species: Selenomonas montiformis
Strain Designation: WCA-380-WT-3B3, WCA-380-WT-3B 3/
Strain history: B. Abt; DSMZ, Germany; DSM 106892 (=WCA-380-WT-3B3) <-- T. Clavel; RWTH Aachen, Germany.
NCBI tax ID(s): 2652285 (species)
version 9.2 (current version)
General
@ref: 65718
BacDive-ID: 158896
DSM-Number: 106892
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Selenomonas montiformis WCA-380-WT-3B3 is an anaerobe, mesophilic, motile bacterium that was isolated from feces; pig, 16 weeks old, wild type.
NCBI tax id
- NCBI tax id: 2652285
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65718 | <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-380-WT-3B3/ |
| 67770 | B. Abt; DSMZ, Germany; DSM 106892 (=WCA-380-WT-3B3) <-- T. Clavel; RWTH Aachen, Germany. |
doi: 10.13145/bacdive158896.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Selenomonadaceae
- genus: Selenomonas
- species: Selenomonas montiformis
- full scientific name: Selenomonas montiformis Wylensek et al. 2021
@ref: 65718
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Selenomonadaceae
genus: Selenomonas
species: Selenomonas montiformis
full scientific name: Selenomonas montiformis
strain designation: WCA-380-WT-3B3, WCA-380-WT-3B 3/
type strain: yes
Morphology
cell morphology
- @ref: 69645
- cell length: 1-2 µm
- motility: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65718 | FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) | yes | https://mediadive.dsmz.de/medium/1203a | Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water |
| 65718 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 69645 | Wilkins-Chalgren Anaerobe broth | yes | supplemented with L-cysteine and DTT (0.05% and 0.02% (w/v), respectively) | |
| 69645 | modified YCFA | yes |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 65718 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
| 69645 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 69480 | anaerobe | 92.194 |
| 69645 | anaerobe |
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 69645 | 17234 | glucose | + | assimilation |
| 69645 | 30031 | succinate | + | assimilation |
| 69645 | 31011 | valerate | + | assimilation |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 69645 | 30089 | acetate | yes |
| 69645 | 48944 | isobutyrate | yes |
| 69645 | 24996 | lactate | yes |
| 69645 | 17272 | propionate | yes |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature | isolation procedure |
|---|---|---|---|---|---|---|---|---|---|
| 65718 | feces; pig, 16 weeks old, wild type | Kranzberg (Bavaria) | Germany | DEU | Europe | ||||
| 67770 | Feces of a German Landrace pig | Freising | Germany | DEU | Europe | ||||
| 69645 | Pig feces | Thalhausen, Bavaria | Germany | DEU | Europe | Wilkins-Chalgren Anaerobe broth | 1-2 days | 37 | anaerobic |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_94919.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_262;96_23390;97_29253;98_65174;99_94919&stattab=map
- Last taxonomy: Selenomonas
- 16S sequence: MN537516
- Sequence Identity:
- Total samples: 8126
- soil counts: 214
- aquatic counts: 125
- animal counts: 7694
- plant counts: 93
Sequence information
16S sequences
- @ref: 65718
- description: Selenomonas montiformis strain WCA-380-WT-3B3 16S ribosomal RNA gene, partial sequence
- accession: MN537516
- length: 1491
- database: nuccore
- NCBI tax ID: 2652285
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Selenomonas montiformis WCA-380-WT-3B3 | GCA_009697385 | contig | ncbi | 2652285 |
| 66792 | Selenomonas sp. WCA-380-WT-3B 3/ | 2605788.3 | wgs | patric | 2652285 |
| 69645 | Whole genome shotgun | VUNL00000000 | ncbi | 2652285 |
GC content
- @ref: 69645
- GC-content: 52.6
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 87.209 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 92.194 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 63.789 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.052 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 87.79 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 66.458 | no |
External links
@ref: 65718
culture collection no.: DSM 106892, JCM 34373
straininfo link
- @ref: 111415
- straininfo: 400030
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65718 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106892 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106892) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 69645 | David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel | A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity | 10.1038/s41467-020-19929-w | |
| 111415 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400030.1 |