Strain identifier
BacDive ID: 158889
Type strain: 
Species: Bifidobacterium thermophilum
Strain Designation: BSM-130-P53-3C
Strain history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; BSM-130-P53-3C
NCBI tax ID(s): 33905 (species)
version 9.1 (current version)
General
@ref: 65711
BacDive-ID: 158889
DSM-Number: 102827
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Bifidobacterium thermophilum BSM-130-P53-3C is an anaerobe bacterium that was isolated from feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53.
NCBI tax id
- NCBI tax id: 33905
- Matching level: species
strain history
- @ref: 65711
- history: <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; BSM-130-P53-3C
doi: 10.13145/bacdive158889.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium thermophilum
- full scientific name: Bifidobacterium thermophilum corrig. Mitsuoka 1969 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bifidobacterium thermophilium
@ref: 65711
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium thermophilum
full scientific name: Bifidobacterium thermophilum Mitsuoka 1969 emend. Nouioui et al. 2018
strain designation: BSM-130-P53-3C
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 93
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65711 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 65711 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 65711
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 65711
- sample type: feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53
- geographic location: Kranzberg (Bavaria)
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_2657.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_607;97_710;98_829;99_2657&stattab=map
- Last taxonomy: Bifidobacterium
- 16S sequence: MN537458
- Sequence Identity:
- Total samples: 25358
- soil counts: 263
- aquatic counts: 756
- animal counts: 24173
- plant counts: 166
Sequence information
16S sequences
- @ref: 65711
- description: Bifidobacterium sp. strain DSM 102827 16S ribosomal RNA gene, partial sequence
- accession: MN537458
- length: 1482
- database: nuccore
- NCBI tax ID: 41200
Genome sequences
- @ref: 66792
- description: Bifidobacterium thermophilum BSM-130-P53-3C
- accession: GCA_012844045
- assembly level: contig
- database: ncbi
- NCBI tax ID: 33905
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.882 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 84.872 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.765 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.779 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.467 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93 | no |
External links
@ref: 65711
culture collection no.: DSM 102827
straininfo link
- @ref: 111408
- straininfo: 398678
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65711 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102827 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102827) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111408 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398678.1 |