Strain identifier
BacDive ID: 158837
Type strain:
Species: Arthrobacter ulcerisalmonis
Strain Designation: T11b
Strain history: <- P. Kaempfer, Univ. Giessen, Germany; T11b <- R. Avendano-Herrera, Universidad Andrés Bello- Sede Vina del Mar;
NCBI tax ID(s): 2483813 (species)
General
@ref: 65659
BacDive-ID: 158837
DSM-Number: 107127
keywords: 16S sequence, Bacteria, mesophilic
description: Arthrobacter ulcerisalmonis T11b is a mesophilic bacterium that was isolated from Fish ulcer, Atlantic salmon .
NCBI tax id
- NCBI tax id: 2483813
- Matching level: species
strain history
- @ref: 65659
- history: <- P. Kaempfer, Univ. Giessen, Germany; T11b <- R. Avendano-Herrera, Universidad Andrés Bello- Sede Vina del Mar;
doi: 10.13145/bacdive158837.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter ulcerisalmonis
- full scientific name: Arthrobacter ulcerisalmonis Kämpfer et al. 2020
@ref: 65659
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter ulcerisalmonis
full scientific name: Arthrobacter ulcerisalmonis Kämpfer et al. 2020
strain designation: T11b
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65659
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 65659
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65659
- sample type: Fish ulcer, Atlantic salmon (farmed)
- geographic location: not kown
- country: Chile
- origin.country: CHL
- continent: Middle and South America
- latitude: -35.75
- longitude: -71
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Aquaculture |
#Host | #Fishes | #Salmonidae |
#Host Body-Site | #Other | #Wound |
#Infection | #Inflammation |
Sequence information
16S sequences
- @ref: 65659
- description: Pseudarthrobacter sp. T11b 16S ribosomal RNA gene, partial sequence
- accession: MK211245
- length: 1407
- database: ena
- NCBI tax ID: 2483813
External links
@ref: 65659
culture collection no.: DSM 107127, CIP 111621, LMG 30632, CCM 8854
straininfo link
- @ref: 111356
- straininfo: 399072
literature
- topic: Phylogeny
- Pubmed-ID: 31985393
- title: Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.
- authors: Kampfer P, Busse HJ, Schumann P, Criscuolo A, Clermont D, Irgang R, Poblete-Morales M, Glaeser SP, Avendano-Herrera R
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004002
- year: 2020
- mesh: Animals, Aquaculture, Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA, Ulcer/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
65659 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107127 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107127) | |
111356 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399072.1 |