Strain identifier

BacDive ID: 158837

Type strain: Yes

Species: Arthrobacter ulcerisalmonis

Strain Designation: T11b

Strain history: <- P. Kaempfer, Univ. Giessen, Germany; T11b <- R. Avendano-Herrera, Universidad Andrés Bello- Sede Vina del Mar;

NCBI tax ID(s): 2483813 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7 (current version):
version 6:
version 5:
version 7 (current version)

General

@ref: 65659

BacDive-ID: 158837

DSM-Number: 107127

keywords: Bacteria, 16S sequence, mesophilic

description: Arthrobacter ulcerisalmonis T11b is a mesophilic bacterium that was isolated from Fish ulcer, Atlantic salmon .

NCBI tax id

  • NCBI tax id: 2483813
  • Matching level: species

strain history: <- P. Kaempfer, Univ. Giessen, Germany; T11b <- R. Avendano-Herrera, Universidad Andrés Bello- Sede Vina del Mar;

doi: 10.13145/bacdive158837.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter ulcerisalmonis
  • full scientific name: Arthrobacter ulcerisalmonis Kämpfer et al. 2020

@ref: 65659

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter ulcerisalmonis

full scientific name: Arthrobacter ulcerisalmonis Kämpfer et al. 2020

strain designation: T11b

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 65659
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 65659
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 65659
  • sample type: Fish ulcer, Atlantic salmon (farmed)
  • geographic location: not kown
  • country: Chile
  • origin.country: CHL
  • continent: Middle and South America
  • latitude: -35.75
  • longitude: -71

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Host#Fishes#Salmonidae
#Host Body-Site#Other#Wound
#Infection#Inflammation

Sequence information

16S sequences

  • @ref: 65659
  • description: Pseudarthrobacter sp. T11b 16S ribosomal RNA gene, partial sequence
  • accession: MK211245
  • length: 1407
  • database: ena
  • NCBI tax ID: 2483813

External links

@ref: 65659

culture collection no.: DSM 107127, CIP 111621, LMG 30632, CCM 8854

literature

  • topic: Phylogeny
  • Pubmed-ID: 31985393
  • title: Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.
  • authors: Kampfer P, Busse HJ, Schumann P, Criscuolo A, Clermont D, Irgang R, Poblete-Morales M, Glaeser SP, Avendano-Herrera R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004002
  • year: 2020
  • mesh: Animals, Aquaculture, Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chile, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA, Ulcer/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65659Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107127Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107127)