Strain identifier
BacDive ID: 158836
Type strain:
Species: Arthrobacter celericrescens
Strain Designation: NEAU-SA2
Strain history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA2 <- R. Yan
NCBI tax ID(s): 2320851 (species)
General
@ref: 65658
BacDive-ID: 158836
DSM-Number: 106718
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped, colony-forming
description: Arthrobacter celericrescens NEAU-SA2 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from soil.
NCBI tax id
- NCBI tax id: 2320851
- Matching level: species
strain history
- @ref: 65658
- history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA2 <- R. Yan
doi: 10.13145/bacdive158836.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter celericrescens
- full scientific name: Arthrobacter celericrescens Yan et al. 2019
@ref: 65658
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter celericrescens
full scientific name: Arthrobacter celericrescens Yan et al. 2019
strain designation: NEAU-SA2
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape |
---|---|---|
68020 | positive | rod-shaped |
68020 | coccus-shaped |
colony morphology
@ref | colony color | colony shape | medium used | incubation period |
---|---|---|---|---|
68020 | pale yellow | circular | Trypticase Soy Agar (TSA) | |
68020 | 2 days |
Culture and growth conditions
culture medium
- @ref: 65658
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65658 | positive | growth | 28 | mesophilic |
68020 | positive | growth | 10-37 | |
68020 | positive | optimum | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
68020 | positive | growth | 6.0-9.0 | alkaliphile |
68020 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 68020
- oxygen tolerance: aerobe
spore formation
- @ref: 68020
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
68020 | NaCl | positive | growth | 0.0-3.0 %(w/v) |
68020 | NaCl | positive | optimum | 0 %(w/v) |
observation
@ref | observation |
---|---|
68020 | Whole-cell sugars contain galactose and glucose |
68020 | The peptidoglycan type is A3alpha |
68020 | The predominant menaquinone is MK-9(H2) |
68020 | The polar lipid profiles consist of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and an unidentified glycolipid |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68020 | 5291 | gelatin | + | assimilation |
68020 | casein | + | hydrolysis | |
68020 | 16947 | citrate | + | assimilation |
68020 | milk | + | assimilation | |
68020 | 17632 | nitrate | - | reduction |
68020 | 62968 | cellulose | - | degradation |
68020 | 4853 | esculin | - | hydrolysis |
68020 | 28017 | starch | - | hydrolysis |
68020 | 53424 | tween 20 | - | hydrolysis |
68020 | 53423 | tween 40 | - | hydrolysis |
68020 | 53426 | tween 80 | - | hydrolysis |
68020 | 16199 | urea | - | hydrolysis |
68020 | esculin ferric citrate | + | builds acid from | |
68020 | 65327 | D-xylose | - | builds acid from |
68020 | 16988 | D-ribose | - | builds acid from |
68020 | potassium 5-dehydro-D-gluconate | - | builds acid from | |
68020 | 30849 | L-arabinose | + | builds acid from |
68020 | 16443 | D-tagatose | - | builds acid from |
68020 | 17634 | D-glucose | + | builds acid from |
68020 | 17306 | maltose | - | builds acid from |
68020 | potassium 2-dehydro-D-gluconate | - | builds acid from | |
68020 | 27082 | trehalose | + | builds acid from |
68020 | 32528 | turanose | + | builds acid from |
68020 | 12936 | D-galactose | - | builds acid from |
68020 | 15824 | D-fructose | + | builds acid from |
68020 | 17992 | sucrose | + | builds acid from |
68020 | 17057 | cellobiose | - | builds acid from |
68020 | 28053 | melibiose | + | builds acid from |
68020 | 18305 | arbutin | - | builds acid from |
68020 | 16024 | D-mannose | - | builds acid from |
68020 | 17814 | salicin | - | builds acid from |
68020 | 17716 | lactose | - | builds acid from |
68020 | 16899 | D-mannitol | + | builds acid from |
68020 | 28087 | glycogen | + | builds acid from |
68020 | 28017 | starch | - | builds acid from |
68020 | 17108 | D-arabinose | - | builds acid from |
68020 | 6731 | melezitose | + | builds acid from |
68020 | 18287 | L-fucose | - | builds acid from |
68020 | 62345 | L-rhamnose | - | builds acid from |
68020 | 28066 | gentiobiose | - | builds acid from |
68020 | 17924 | D-sorbitol | - | builds acid from |
68020 | 18333 | D-arabitol | - | builds acid from |
68020 | 62318 | D-lyxose | - | builds acid from |
68020 | 28847 | D-fucose | - | builds acid from |
68020 | 17754 | glycerol | + | builds acid from |
68020 | 59640 | N-acetylglucosamine | + | builds acid from |
68020 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68020 | 17268 | myo-inositol | + | builds acid from |
68020 | 32032 | potassium gluconate | - | builds acid from |
68020 | 74863 | methyl beta-D-xylopyranoside | + | builds acid from |
68020 | 16634 | raffinose | + | builds acid from |
68020 | 27613 | amygdalin | - | builds acid from |
68020 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68020 | 17113 | erythritol | - | builds acid from |
68020 | 65328 | L-xylose | - | builds acid from |
68020 | 15963 | ribitol | - | builds acid from |
68020 | 17266 | L-sorbose | - | builds acid from |
68020 | 16813 | galactitol | - | builds acid from |
68020 | 15443 | inulin | + | builds acid from |
68020 | 17151 | xylitol | - | builds acid from |
68020 | 18403 | L-arabitol | - | builds acid from |
68020 | 17306 | maltose | + | carbon source |
68020 | 30849 | L-arabinose | + | carbon source |
68020 | 15824 | D-fructose | + | carbon source |
68020 | 12936 | D-galactose | + | carbon source |
68020 | 17634 | D-glucose | + | carbon source |
68020 | 17268 | myo-inositol | + | carbon source |
68020 | 17716 | lactose | + | carbon source |
68020 | 16899 | D-mannitol | + | carbon source |
68020 | 37684 | mannose | + | carbon source |
68020 | 16634 | raffinose | + | carbon source |
68020 | 17992 | sucrose | + | carbon source |
68020 | 65327 | D-xylose | + | carbon source |
68020 | 16988 | D-ribose | - | carbon source |
68020 | 62345 | L-rhamnose | - | carbon source |
68020 | 17924 | D-sorbitol | - | carbon source |
68020 | 16977 | L-alanine | + | nitrogen source |
68020 | 16467 | L-arginine | + | nitrogen source |
68020 | 17196 | L-asparagine | + | nitrogen source |
68020 | 29991 | L-aspartate | + | nitrogen source |
68020 | 16919 | creatine | + | nitrogen source |
68020 | 29985 | L-glutamate | + | nitrogen source |
68020 | 18050 | L-glutamine | + | nitrogen source |
68020 | 15428 | glycine | + | nitrogen source |
68020 | 17203 | L-proline | + | nitrogen source |
68020 | 17115 | L-serine | + | nitrogen source |
68020 | 16857 | L-threonine | + | nitrogen source |
68020 | 17895 | L-tyrosine | + | nitrogen source |
68020 | 4853 | esculin | + | hydrolysis |
68020 | 17234 | glucose | - | fermentation |
68020 | 5291 | gelatin | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68020 | 16136 | hydrogen sulfide | no |
68020 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | methylred-test | voges-proskauer-test |
---|---|---|---|---|
68020 | 17234 | glucose | - | |
68020 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68020 | catalase | + | 1.11.1.6 |
68020 | alkaline phosphatase | + | 3.1.3.1 |
68020 | esterase (C 4) | + | |
68020 | esterase Lipase (C 8) | + | |
68020 | leucine arylamidase | + | 3.4.11.1 |
68020 | valine arylamidase | + | |
68020 | cystine arylamidase | + | 3.4.11.3 |
68020 | acid phosphatase | + | 3.1.3.2 |
68020 | trypsin | + | 3.4.21.4 |
68020 | naphthol-AS-BI-phosphohydrolase | + | |
68020 | alpha-galactosidase | + | 3.2.1.22 |
68020 | alpha-glucosidase | + | 3.2.1.20 |
68020 | beta-glucosidase | + | 3.2.1.21 |
68020 | alpha-mannosidase | + | 3.2.1.24 |
68020 | alpha-fucosidase | + | 3.2.1.51 |
68020 | beta-galactosidase | + | 3.2.1.23 |
68020 | arginine dihydrolase | - | 3.5.3.6 |
68020 | urease | - | 3.5.1.5 |
68020 | lipase (C 14) | - | |
68020 | alpha-chymotrypsin | - | 3.4.21.1 |
68020 | beta-glucuronidase | - | 3.2.1.31 |
68020 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
65658 | soil | Hunan province, Zhangjiajie | China | CHN | Asia | ||
68020 | forest soil | Zhangjiajie city, Hunan Province | China | CHN | Asia | 28.8667 | 109.667 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 65658
- description: Arthrobacter sp. strain NEAU-SA2 16S ribosomal RNA gene, partial sequence
- accession: MH063435
- length: 1516
- database: ena
- NCBI tax ID: 1667
Genome sequences
- @ref: 68020
- description: Arthrobacter celericrescens NEAU-SA2
- accession: GCA_003614925
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2320851
GC content
- @ref: 68020
- GC-content: 67.04
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 95.648 | no |
gram-positive | yes | 93.126 | yes |
anaerobic | no | 99.517 | no |
aerobic | yes | 96.663 | no |
halophile | no | 92.171 | yes |
spore-forming | no | 85.155 | yes |
glucose-util | yes | 86.077 | yes |
motile | no | 90.951 | no |
glucose-ferment | no | 87.664 | yes |
thermophile | no | 98.299 | yes |
External links
@ref: 65658
culture collection no.: DSM 106718, CCTCC AB 2017272
straininfo link
- @ref: 111355
- straininfo: 401689
literature
- topic: Phylogeny
- Pubmed-ID: 31329533
- title: Arthrobacter celericrescens sp. nov., isolated from forest soil.
- authors: Yan R, Liu D, Fu Y, Zhang Y, Ju H, Zhao J, Wang X, Zhang J, Xiang W
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003597
- year: 2019
- mesh: Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
65658 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-106718 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106718) | ||
68020 | Rui Yan, Dongli Liu, Yansong Fu, Ye Zhang, Hanxun Ju, Junwei Zhao, Xiangjing Wang, Ji Zhang, Wensheng Xiang | Arthrobacter celericrescens sp. nov., isolated from forest soil | 10.1099/ijsem.0.003597 | IJSEM 69: 3093-3099 2019 | |
111355 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401689.1 |