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Strain identifier

BacDive ID: 158836

Type strain: Yes

Species: Arthrobacter celericrescens

Strain Designation: NEAU-SA2

Strain history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA2 <- R. Yan

NCBI tax ID(s): 2320851 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65658

BacDive-ID: 158836

DSM-Number: 106718

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped, colony-forming

description: Arthrobacter celericrescens NEAU-SA2 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 2320851
  • Matching level: species

strain history: <- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-SA2 <- R. Yan

doi: 10.13145/bacdive158836.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter celericrescens
  • full scientific name: Arthrobacter celericrescens Yan et al. 2019

@ref: 65658

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter celericrescens

full scientific name: Arthrobacter celericrescens Yan et al. 2019

strain designation: NEAU-SA2

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidence
68020positiverod-shaped
68020coccus-shaped
69480positive98.677

colony morphology

@refcolony colorcolony shapemedium usedincubation period
68020pale yellowcircularTrypticase Soy Agar (TSA)
680202 days

Culture and growth conditions

culture medium

  • @ref: 65658
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65658positivegrowth28mesophilic
68020positivegrowth10-37
68020positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
68020positivegrowth6.0-9.0alkaliphile
68020positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 68020
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
68020no
69480no96.669

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
68020NaClpositivegrowth0.0-3.0 %(w/v)
68020NaClpositiveoptimum0 %(w/v)
69480non-halophilic96.797

observation

@refobservation
68020Whole-cell sugars contain galactose and glucose
68020The peptidoglycan type is A3alpha
68020The predominant menaquinone is MK-9(H2)
68020The polar lipid profiles consist of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and an unidentified glycolipid

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
680205291gelatin+assimilation
68020casein+hydrolysis
6802016947citrate+assimilation
68020milk+assimilation
6802017632nitrate-reduction
6802062968cellulose-degradation
680204853esculin-hydrolysis
6802028017starch-hydrolysis
6802053424tween 20-hydrolysis
6802053423tween 40-hydrolysis
6802053426tween 80-hydrolysis
6802016199urea-hydrolysis
68020esculin ferric citrate+builds acid from
6802065327D-xylose-builds acid from
6802016988D-ribose-builds acid from
68020potassium 5-dehydro-D-gluconate-builds acid from
6802030849L-arabinose+builds acid from
6802016443D-tagatose-builds acid from
6802017634D-glucose+builds acid from
6802017306maltose-builds acid from
68020potassium 2-dehydro-D-gluconate-builds acid from
6802027082trehalose+builds acid from
6802032528turanose+builds acid from
6802012936D-galactose-builds acid from
6802015824D-fructose+builds acid from
6802017992sucrose+builds acid from
6802017057cellobiose-builds acid from
6802028053melibiose+builds acid from
6802018305arbutin-builds acid from
6802016024D-mannose-builds acid from
6802017814salicin-builds acid from
6802017716lactose-builds acid from
6802016899D-mannitol+builds acid from
6802028087glycogen+builds acid from
6802028017starch-builds acid from
6802017108D-arabinose-builds acid from
680206731melezitose+builds acid from
6802018287L-fucose-builds acid from
6802062345L-rhamnose-builds acid from
6802028066gentiobiose-builds acid from
6802017924D-sorbitol-builds acid from
6802018333D-arabitol-builds acid from
6802062318D-lyxose-builds acid from
6802028847D-fucose-builds acid from
6802017754glycerol+builds acid from
6802059640N-acetylglucosamine+builds acid from
68020320061methyl alpha-D-glucopyranoside-builds acid from
6802017268myo-inositol+builds acid from
6802032032potassium gluconate-builds acid from
6802074863methyl beta-D-xylopyranoside+builds acid from
6802016634raffinose+builds acid from
6802027613amygdalin-builds acid from
6802043943methyl alpha-D-mannoside-builds acid from
6802017113erythritol-builds acid from
6802065328L-xylose-builds acid from
6802015963ribitol-builds acid from
6802017266L-sorbose-builds acid from
6802016813galactitol-builds acid from
6802015443inulin+builds acid from
6802017151xylitol-builds acid from
6802018403L-arabitol-builds acid from
6802017306maltose+carbon source
6802030849L-arabinose+carbon source
6802015824D-fructose+carbon source
6802012936D-galactose+carbon source
6802017634D-glucose+carbon source
6802017268myo-inositol+carbon source
6802017716lactose+carbon source
6802016899D-mannitol+carbon source
6802037684mannose+carbon source
6802016634raffinose+carbon source
6802017992sucrose+carbon source
6802065327D-xylose+carbon source
6802016988D-ribose-carbon source
6802062345L-rhamnose-carbon source
6802017924D-sorbitol-carbon source
6802016977L-alanine+nitrogen source
6802016467L-arginine+nitrogen source
6802017196L-asparagine+nitrogen source
6802029991L-aspartate+nitrogen source
6802016919creatine+nitrogen source
6802029985L-glutamate+nitrogen source
6802018050L-glutamine+nitrogen source
6802015428glycine+nitrogen source
6802017203L-proline+nitrogen source
6802017115L-serine+nitrogen source
6802016857L-threonine+nitrogen source
6802017895L-tyrosine+nitrogen source
680204853esculin+hydrolysis
6802017234glucose-fermentation
680205291gelatin-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6802016136hydrogen sulfideno
6802035581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6802017234glucose-
6802015688acetoin-

enzymes

@refvalueactivityec
68020catalase+1.11.1.6
68020alkaline phosphatase+3.1.3.1
68020esterase (C 4)+
68020esterase Lipase (C 8)+
68020leucine arylamidase+3.4.11.1
68020valine arylamidase+
68020cystine arylamidase+3.4.11.3
68020acid phosphatase+3.1.3.2
68020trypsin+3.4.21.4
68020naphthol-AS-BI-phosphohydrolase+
68020alpha-galactosidase+3.2.1.22
68020alpha-glucosidase+3.2.1.20
68020beta-glucosidase+3.2.1.21
68020alpha-mannosidase+3.2.1.24
68020alpha-fucosidase+3.2.1.51
68020beta-galactosidase+3.2.1.23
68020arginine dihydrolase-3.5.3.6
68020urease-3.5.1.5
68020lipase (C 14)-
68020alpha-chymotrypsin-3.4.21.1
68020beta-glucuronidase-3.2.1.31
68020N-acetyl-beta-glucosaminidase-3.2.1.52

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
65658soilHunan province, ZhangjiajieChinaCHNAsia
68020forest soilZhangjiajie city, Hunan ProvinceChinaCHNAsia28.8667109.667

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 65658
  • description: Arthrobacter sp. strain NEAU-SA2 16S ribosomal RNA gene, partial sequence
  • accession: MH063435
  • length: 1516
  • database: ena
  • NCBI tax ID: 1667

Genome sequences

  • @ref: 68020
  • description: Arthrobacter celericrescens NEAU-SA2
  • accession: GCA_003614925
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2320851

GC content

  • @ref: 68020
  • GC-content: 67.04
  • method: genome sequence analysis

External links

@ref: 65658

culture collection no.: DSM 106718, CCTCC AB 2017272

literature

  • topic: Phylogeny
  • Pubmed-ID: 31329533
  • title: Arthrobacter celericrescens sp. nov., isolated from forest soil.
  • authors: Yan R, Liu D, Fu Y, Zhang Y, Ju H, Zhao J, Wang X, Zhang J, Xiang W
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003597
  • year: 2019
  • mesh: Arthrobacter/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65658Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106718Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106718)
68020Rui Yan, Dongli Liu, Yansong Fu, Ye Zhang, Hanxun Ju, Junwei Zhao, Xiangjing Wang, Ji Zhang, Wensheng XiangArthrobacter celericrescens sp. nov., isolated from forest soil10.1099/ijsem.0.003597IJSEM 69: 3093-3099 2019
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes