Strain identifier
BacDive ID: 158835
Type strain: 
Species: Arthrobacter sp.
Strain Designation: BL-252-APC-1A
Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
NCBI tax ID(s): 1667 (species)
General
@ref: 65657
BacDive-ID: 158835
DSM-Number: 105845
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Arthrobacter sp. BL-252-APC-1A is a mesophilic animal pathogen that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.
NCBI tax id
- NCBI tax id: 1667
- Matching level: species
strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;
doi: 10.13145/bacdive158835.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 65657
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
strain designation: BL-252-APC-1A
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 98.936
Culture and growth conditions
culture medium
- @ref: 65657
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 65657
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 96.963
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 95.869
Isolation, sampling and environmental information
isolation
- @ref: 65657
- sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
- geographic location: Munich
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_6941.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_458;97_525;98_603;99_6941&stattab=map
- Last taxonomy: Arthrobacter
- 16S sequence: MN537501
- Sequence Identity:
- Total samples: 25
- soil counts: 8
- aquatic counts: 2
- animal counts: 15
Safety information
risk assessment
- @ref: 65657
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 65657
- description: Arthrobacter sp. strain DSM 105845 16S ribosomal RNA gene, partial sequence
- accession: MN537501
- length: 1470
- database: ena
- NCBI tax ID: 1667
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Arthrobacter sp. BL-252-APC-1A strain BL-252-APC-1A (aerob) strain BL-252-APC-1A (aerob) strain BL-252-APC-1A (aerob) | 2606622.3 | wgs | patric | 2606622 |
| 66792 | Arthrobacter sp. BL-252-APC-1A | 2904630410 | draft | img | 2606622 |
| 66792 | Candidatus Ventrisoma faecale ChiHcolR19-5415 | GCA_018712505 | contig | patric | 2840960 |
External links
@ref: 65657
culture collection no.: DSM 105845
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65657 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105845 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105845) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |