We are hiring!

Strain identifier

BacDive ID: 158835

Type strain: No

Species: Arthrobacter sp.

Strain Designation: BL-252-APC-1A

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

NCBI tax ID(s): 1667 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 7.1 (current version)

General

@ref: 65657

BacDive-ID: 158835

DSM-Number: 105845

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Arthrobacter sp. BL-252-APC-1A is a mesophilic animal pathogen that was isolated from feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

NCBI tax id

  • NCBI tax id: 1667
  • Matching level: species

strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany;

doi: 10.13145/bacdive158835.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Arthrobacter
  • species: Arthrobacter sp.
  • full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)

@ref: 65657

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter sp.

full scientific name: Arthrobacter sp.

strain designation: BL-252-APC-1A

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 98.936

Culture and growth conditions

culture medium

  • @ref: 65657
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 65657
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.963

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 95.869

Isolation, sampling and environmental information

isolation

  • @ref: 65657
  • sample type: feces; pig, 10 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
  • geographic location: Munich
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Mammals#Suidae (Pig,Swine)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6941.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_458;97_525;98_603;99_6941&stattab=map
  • Last taxonomy: Arthrobacter
  • 16S sequence: MN537501
  • Sequence Identity:
  • Total samples: 25
  • soil counts: 8
  • aquatic counts: 2
  • animal counts: 15

Safety information

risk assessment

  • @ref: 65657
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 65657
  • description: Arthrobacter sp. strain DSM 105845 16S ribosomal RNA gene, partial sequence
  • accession: MN537501
  • length: 1470
  • database: ena
  • NCBI tax ID: 1667

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter sp. BL-252-APC-1A strain BL-252-APC-1A (aerob) strain BL-252-APC-1A (aerob) strain BL-252-APC-1A (aerob)2606622.3wgspatric2606622
66792Arthrobacter sp. BL-252-APC-1A2904630410draftimg2606622
66792Candidatus Ventrisoma faecale ChiHcolR19-5415GCA_018712505contigpatric2840960

External links

@ref: 65657

culture collection no.: DSM 105845

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65657Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105845Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105845)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes