Strain identifier

BacDive ID: 158804

Type strain: Yes

Species: Winogradskyella pocilloporae

Strain Designation: AFPH31

Strain history: CIP <- 2017, S. Glaeser, Giessen Univ., Giessen, Germany: strain AFPH31

NCBI tax ID(s): 2161678 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65566

BacDive-ID: 158804

keywords: 16S sequence, Bacteria, obligate aerobe, halophilic, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Winogradskyella pocilloporae AFPH31 is an obligate aerobe, halophilic, mesophilic bacterium that forms circular colonies and was isolated from internal healhy tissues of the scleractinian coral Pocillopora damicornis,which was cultured in an aquarium.

NCBI tax id

  • NCBI tax id: 2161678
  • Matching level: species

strain history

  • @ref: 121919
  • history: CIP <- 2017, S. Glaeser, Giessen Univ., Giessen, Germany: strain AFPH31

doi: 10.13145/bacdive158804.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Winogradskyella
  • species: Winogradskyella pocilloporae
  • full scientific name: Winogradskyella pocilloporae Franco et al. 2018

@ref: 65566

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Winogradskyella

species: Winogradskyella pocilloporae

strain designation: AFPH31

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
65566negative1.8-2.2 µm0.7-1.1 µmrod-shapedno
121919negativerod-shapedno

colony morphology

  • @ref: 65566
  • colony color: shiny orange-yellow
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA

pigmentation

@refproductionnamecolor
65566noflexirubin-type
65566yesyellow

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
65566Reasoner's 2A agar (R2A)yeswith 3 %(w/v) NaCl
65566Marine agar (MA)yes
65566Trypticase Soy Agar (TSA)yeswith 3 %(w/v) NaCl
121919CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
65566positiveoptimum25mesophilic
65566positivegrowth15-37

culture pH

@refabilitytypepHPH range
65566positivegrowth5.5-9.0alkaliphile
65566positiveoptimum6.0-8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 65566
  • oxygen tolerance: obligate aerobe

halophily

@refhalophily levelsaltgrowthtested relationconcentration
65566halophilicNaClpositivegrowth0.5-8.5 %(w/v)
65566NaClpositiveoptimum1.0-4.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65566309162-oxoglutarate-assimilation
65566161933-hydroxybenzoate-assimilation
65566370543-hydroxybutyrate-assimilation
6556616865gamma-aminobutyric acid-assimilation
65566178794-hydroxybenzoate-assimilation
6556616708adenine-hydrolysis
6556617128adipate-assimilation
6556615963ribitol-assimilation
6556615963ribitol-builds acid from
6556617925alpha-D-glucose-assimilation
6556617925alpha-D-glucose+builds acid from
6556627907alpha-L-rhamnose-assimilation
6556627907alpha-L-rhamnose-builds acid from
6556618305arbutin-assimilation
6556678208azelaate-assimilation
6556616958beta-alanine-assimilation
6556627689decanoate-assimilation
65566casein-hydrolysis
6556617057cellobiose-assimilation
6556617057cellobiose-builds acid from
6556662968cellulose-hydrolysis
6556616383cis-aconitate-assimilation
6556616947citrate-assimilation
6556618333D-arabitol-builds acid from
6556615824D-fructose-assimilation
6556612936D-galactose-assimilation
6556618391D-gluconate-assimilation
6556616899D-mannitol-builds acid from
6556616899D-mannitol+assimilation
6556616024D-mannose-assimilation
6556616024D-mannose-builds acid from
6556616988D-ribose-assimilation
6556617924D-sorbitol-assimilation
6556617924D-sorbitol-builds acid from
6556665327D-xylose-assimilation
6556665327D-xylose+builds acid from
6556624996lactate-assimilation
6556616991dna-hydrolysis
6556616813galactitol-builds acid from
6556617113erythritol-builds acid from
655664853esculin+hydrolysis
6556629806fumarate-assimilation
655665291gelatin-hydrolysis
6556617234glucose-assimilation
6556617234glucose-fermentation
6556617859glutaric acid-assimilation
6556617368hypoxanthine+hydrolysis
6556617268myo-inositol-builds acid from
6556617268myo-inositol+assimilation
6556617240itaconate-assimilation
6556616977L-alanine-assimilation
6556630849L-arabinose-assimilation
6556630849L-arabinose+builds acid from
6556629991L-aspartate-assimilation
6556629991L-aspartate+assimilation
6556615971L-histidine-assimilation
6556615603L-leucine-assimilation
6556615589L-malate-assimilation
6556615729L-ornithine-assimilation
6556617295L-phenylalanine-assimilation
6556617203L-proline-assimilation
6556617115L-serine-assimilation
6556616828L-tryptophan+assimilation
6556617716lactose-builds acid from
6556625115malate-assimilation
6556668428maltitol-assimilation
6556617306maltose-assimilation
6556617306maltose+builds acid from
6556628053melibiose-builds acid from
6556636986mesaconate-assimilation
65566320061methyl alpha-D-glucopyranoside-builds acid from
6556628037N-acetylgalactosamine-assimilation
65566506227N-acetylglucosamine-assimilation
6556617632nitrate-reduction
6556618401phenylacetate-assimilation
6556632032potassium gluconate-assimilation
6556617272propionate-assimilation
6556617148putrescine-assimilation
6556615361pyruvate-assimilation
6556616634raffinose-builds acid from
6556617814salicin-assimilation
6556617814salicin-builds acid from
6556632954sodium acetate-assimilation
6556653258sodium citrate-assimilation
6556628017starch+hydrolysis
655669300suberic acid-assimilation
6556617992sucrose-assimilation
6556617992sucrose-builds acid from
6556615708trans-aconitate-assimilation
6556627082trehalose-assimilation
6556627082trehalose-builds acid from
6556653424tween 20-hydrolysis
6556653423tween 40+hydrolysis
6556653425tween 60+hydrolysis
6556653426tween 80-hydrolysis
6556618186tyrosine-hydrolysis
6556616199urea-hydrolysis
6556615318xanthine+hydrolysis
6556637166xylan-hydrolysis

metabolite production

  • @ref: 65566
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
65566catalase+1.11.1.6
65566cytochrome oxidase+1.9.3.1
65566alkaline phosphatase+3.1.3.1
65566esterase (C 4)+
65566esterase Lipase (C 8)+
65566leucine arylamidase+3.4.11.1
65566valine arylamidase+
65566acid phosphatase+3.1.3.2
65566naphthol-AS-BI-phosphohydrolase+
65566lipase (C 14)-
65566cystine arylamidase-3.4.11.3
65566trypsin-3.4.21.4
65566alpha-chymotrypsin-3.4.21.1
65566alpha-galactosidase-3.2.1.22
65566beta-glucuronidase-3.2.1.31
65566alpha-glucosidase-3.2.1.20
65566beta-glucosidase-3.2.1.21
65566N-acetyl-beta-glucosaminidase-3.2.1.52
65566alpha-mannosidase-3.2.1.24
65566alpha-fucosidase-3.2.1.51
65566arginine dihydrolase-3.5.3.6
65566urease-3.5.1.5
65566beta-galactosidase-3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65566C15:011.9
    65566C15:0 iso22
    65566C15:1 iso G16.9
    65566C16:0 iso4.4
    65566C16:1 iso H4.7
    65566C15:1ω6c3.3
    65566C17:1ω6c3.6
    65566C17:1 iso ω9c3.2
    65566C15:0 iso 3OH6
    65566C16:0 iso 3OH4.4
    65566C17:0 iso 3OH14.9
    65566unknown 13.5651.6
    65566C16:1ω7c / C15:0 iso 2OH3.1
  • type of FA analysis: whole cell analysis
  • incubation medium: MA
  • incubation temperature: 25
  • incubation time: 3
  • library/peak naming table: TSBA4.1
  • system: MIS MIDI
  • method/protocol: Kämpfer & Kroppenstedt 1996
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperatureisolation date
65566internal healhy tissues of the scleractinian coral Pocillopora damicornis,which was cultured in an aquariumJustus Liebig University, GiessenGermanyDEUEuropeMA5 days28
121919Environment, Tissue, coral Pocillopora damicornisGiessen, HessenGermanyDEUEurope2016-06-29

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Cnidaria (Corals)
#Engineered#Built environment#Water reservoir (Aquarium/pool)

Safety information

risk assessment

  • @ref: 121919
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 65566
  • description: 16S rRNA gene sequence
  • accession: MG571571
  • database: nuccore

GC content

  • @ref: 65566
  • GC-content: 36.8
  • method: Thermal denaturation, fluorometry

External links

@ref: 65566

culture collection no.: CCM 8816, CIP 111546

straininfo link

  • @ref: 111344
  • straininfo: 412824

literature

  • topic: Phylogeny
  • Pubmed-ID: 29620493
  • title: Winogradskyella pocilloporae sp. nov. isolated from healthy tissue of the coral Pocillopora damicornis.
  • authors: Franco A, Busse HJ, Schubert P, Wilke T, Kampfer P, Glaeser SP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002731
  • year: 2018
  • mesh: Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Germany, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65566Angel Franco, Hans-Jürgen Busse, Patrick Schubert, Thomas Wilke, Peter Kämpfer and Stefanie P. GlaeserWinogradskyella pocilloporae sp. nov. isolated from healthy tissue of the coral Pocillopora damicornis10.1099/ijsem.0.002731IJSEM 68: 1689-1696 201829620493
111344Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412824.1
121919Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111546Collection of Institut Pasteur (CIP 111546)