Strain identifier

BacDive ID: 158803

Type strain: Yes

Species: Aquimarina celericrescens

Strain Designation: NS08

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1964542 (species)

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General

@ref: 65565

BacDive-ID: 158803

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Aquimarina celericrescens NS08 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from coastal seawater.

NCBI tax id

  • NCBI tax id: 1964542
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ.

doi: 10.13145/bacdive158803.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina celericrescens
  • full scientific name: Aquimarina celericrescens Wang et al. 2018

@ref: 65565

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina celericrescens

strain designation: NS08

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
65565negative2.5-23.0 µm0.2-0.3 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative

colony morphology

  • @ref: 65565
  • colony size: 1.0-2.0 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 2 days
  • medium used: MA

pigmentation

@refproductionname
65565yescarotenoid pigment
65565noflexirubin-type

Culture and growth conditions

culture medium

  • @ref: 65565
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65565positivegrowth10-37
65565positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
65565positivegrowth6.5-9.0alkaliphile
65565positiveoptimum7.0-7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65565aerobe
67771aerobe

spore formation

  • @ref: 65565
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
65565NaClpositivegrowth1.0-5.0 %(w/v)
65565NaClpositiveoptimum2.0-3.0 %(w/v)slightly halophilic

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65565581435-dehydro-D-gluconate+builds acid from
6556527613amygdalin+builds acid from
6556585146carboxymethylcellulose+hydrolysis
6556517057cellobiose+builds acid from
6556517057cellobiose+carbon source
6556517057cellobiose+energy source
6556517057cellobiose+oxidation
6556516947citrate-carbon source
6556515963ribitol-builds acid from
6556515824D-fructose+builds acid from
6556515824D-fructose+carbon source
6556515824D-fructose+energy source
6556515824D-fructose+oxidation
6556512936D-galactose+builds acid from
6556512936D-galactose+carbon source
6556512936D-galactose+energy source
6556512936D-galactose+oxidation
6556517634D-glucose+builds acid from
6556516899D-mannitol+carbon source
6556516899D-mannitol+energy source
6556516899D-mannitol+oxidation
6556516024D-mannose+builds acid from
6556516024D-mannose+carbon source
6556516024D-mannose+energy source
6556516024D-mannose+oxidation
6556517924D-sorbitol-builds acid from
6556517924D-sorbitol+carbon source
6556517924D-sorbitol+energy source
6556517924D-sorbitol+oxidation
6556516443D-tagatose+builds acid from
6556565327D-xylose+builds acid from
6556517113erythritol-builds acid from
655654853esculin+builds acid from
6556528066gentiobiose+builds acid from
6556524265gluconate-builds acid from
6556528087glycogen+builds acid from
6556530849L-arabinose+builds acid from
6556517266L-sorbose-builds acid from
6556517716lactose+carbon source
6556517716lactose+energy source
6556517716lactose+oxidation
6556517306maltose+builds acid from
6556517306maltose+carbon source
6556517306maltose+energy source
6556517306maltose+oxidation
6556528053melibiose+builds acid from
6556528053melibiose+carbon source
6556528053melibiose+energy source
6556528053melibiose+oxidation
65565320061methyl alpha-D-glucopyranoside+builds acid from
6556537657methyl D-glucoside+carbon source
6556537657methyl D-glucoside+energy source
6556537657methyl D-glucoside+oxidation
6556517268myo-inositol+carbon source
6556517268myo-inositol+energy source
6556517268myo-inositol+oxidation
65565506227N-acetylglucosamine+builds acid from
6556517632nitrate-reduction
6556516634raffinose+carbon source
6556516634raffinose+energy source
6556516634raffinose+oxidation
6556553311sodium alginate+hydrolysis
6556517164stachyose+carbon source
6556517164stachyose+energy source
6556517164stachyose+oxidation
6556528017starch+builds acid from
6556528017starch+hydrolysis
6556517992sucrose+carbon source
6556517992sucrose+energy source
6556517992sucrose+oxidation
6556532528turanose+carbon source
6556532528turanose+energy source
6556532528turanose+oxidation
6556553424tween 20-hydrolysis
6556553423tween 40-hydrolysis
6556553425tween 60-hydrolysis
6556553426tween 80-hydrolysis
6556517151xylitol-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6556517334penicillinyesyes10 µg (disc)
6556528971ampicillinyesyes10 µg (disc)
6556548923erythromycinyesyes15 µg (disc)
6556528001vancomycinyesyes30 µg (disc)
6556517698chloramphenicolyesyes30 µg (disc)
6556527902tetracyclineyesyes30 µg (disc)
6556553727sulfamethoxydiazineyesyes5 µg (disc)
6556528864tobramycinyesyes10 µg (disc)
6556517833gentamicinyesyes10 µg (disc)
6556517076streptomycinyesyes10 µg (disc)
655653732clarithromycinyesyes15 µg (disc)
655653745clindamycinyesyes30 µg (disc)
655656104kanamycinyesyes30 µg (disc)
655653498cefotaxime sodiumyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6556515688acetoinno
6556516136hydrogen sulfideno
6556535581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testcitrate test
6556515688acetoin-
6556516947citrate-

enzymes

@refvalueactivityec
65565catalase+1.11.1.6
65565cytochrome oxidase-1.9.3.1
65565gelatinase+
65565leucine arylamidase+3.4.11.1
65565valine arylamidase+
65565trypsin+3.4.21.4
65565alpha-chymotrypsin+3.4.21.1
65565acid phosphatase+3.1.3.2
65565naphthol-AS-BI-phosphohydrolase+
65565esterase (C 4)-
65565esterase Lipase (C 8)-
65565lipase (C 14)-
65565cystine arylamidase-3.4.11.3
65565alpha-galactosidase-3.2.1.22
65565beta-glucuronidase-3.2.1.31
65565beta-glucosidase-3.2.1.21
65565N-acetyl-beta-glucosaminidase-3.2.1.52
65565alpha-mannosidase-3.2.1.24
65565alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65565C15:01.6
    65565C16:00.5
    65565C17:1 iso ω9c3.3
    65565C13:0 iso0.8
    65565C15:1 iso G5.2
    65565C15:0 iso51.5
    65565C15:0 anteiso0.5
    65565C16:0 iso1
    65565C17:0 iso4
    65565C15:0 iso 3OH3.9
    65565C16:0 iso 3OH0.7
    65565C17:0 iso 3OH19.6
    65565unknown 11.5430.6
    65565unknown 13.5657.1
    65565unknown 16.5821
  • type of FA analysis: whole cell analysis
  • incubation medium: MB
  • incubation temperature: 30
  • incubation time: 2
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA40
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperature
65565coastal seawater2016-10Xiaoshi Island, WeihaiChinaCHNAsia37.5267122.016MA7 days28
67771From coastal seawater of Xiaoshi IslandWeihaiChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_156605.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_59102;97_76505;98_103228;99_156605&stattab=map
  • Last taxonomy: Aquimarina celericrescens subclade
  • 16S sequence: KY653239
  • Sequence Identity:
  • Total samples: 168
  • soil counts: 1
  • aquatic counts: 166
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 65565
  • description: 16S rRNA gene sequence
  • accession: KY653239
  • database: nuccore

Genome sequences

  • @ref: 66792
  • description: Aquimarina celericrescens NS08
  • accession: GCA_018066725
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1964542

GC content

@refGC-contentmethod
6556539.4high performance liquid chromatography (HPLC)
6777139.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.134yes
gram-positiveno97.769no
anaerobicno99.258no
aerobicyes86.672yes
halophileno65.103no
spore-formingno92.059no
thermophileno99.588yes
glucose-utilyes77.805no
motileno87.002no
glucose-fermentno89.192no

External links

@ref: 65565

culture collection no.: KCTC 52897, MCCC 1H00191

literature

  • topic: Phylogeny
  • Pubmed-ID: 29580323
  • title: Aquimarina celericrescens sp. nov., isolated from seawater.
  • authors: Wang NN, Li CM, Li YX, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002733
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65565Nan-Nan Wang, Chang-Ming Li, Ying-Xiu Li and Zong-Jun DuAquimarina celericrescens sp. nov., isolated from seawater10.1099/ijsem.0.002733IJSEM 68: 1683-1688 201829580323
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/