Strain identifier
BacDive ID: 158789
Type strain: 
Species: Rathayibacter oskolensis
Strain Designation: DL-329
NCBI tax ID(s): 1891671 (species)
version 8.1 (current version)
General
@ref: 65545
BacDive-ID: 158789
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped, colony-forming
description: Rathayibacter oskolensis DL-329 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from above ground part of healthy Androsace koso-poljanskii.
NCBI tax id
- NCBI tax id: 1891671
- Matching level: species
doi: 10.13145/bacdive158789.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Rathayibacter
- species: Rathayibacter oskolensis
- full scientific name: Rathayibacter oskolensis Dorofeeva et al. 2018
@ref: 65545
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Rathayibacter
species: Rathayibacter oskolensis
strain designation: DL-329
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 65545 | positive | 1.1-2.0 µm | 0.5-0.7 µm | rod-shaped | no |
| 65545 | 0.6-0.8 µm | coccus-shaped |
colony morphology
- @ref: 65545
- colony color: yellow
- colony shape: circular
- medium used: R2A
Culture and growth conditions
culture medium
| @ref | name | growth |
|---|---|---|
| 65545 | CB agar | yes |
| 65545 | Reasoner's 2A agar (R2A) | yes |
| 65545 | BHI agar | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 65545 | positive | optimum | 24-28 | |
| 65545 | no | growth | 7 | psychrophilic |
| 65545 | no | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 65545
- oxygen tolerance: aerobe
observation
| @ref | observation |
|---|---|
| 65545 | singly or in pairs |
| 65545 | primary branching |
| 65545 | changing from rod-shaped to coccus-shaped in older (5-7 days) cultures |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 65545 | 15963 | ribitol | - | carbon source |
| 65545 | 17057 | cellobiose | + | carbon source |
| 65545 | 15824 | D-fructose | + | carbon source |
| 65545 | 12936 | D-galactose | + | carbon source |
| 65545 | 17634 | D-glucose | + | carbon source |
| 65545 | 65327 | D-xylose | + | carbon source |
| 65545 | 16813 | galactitol | + | carbon source |
| 65545 | 17113 | erythritol | - | carbon source |
| 65545 | 17368 | hypoxanthine | - | hydrolysis |
| 65545 | 15443 | inulin | + | carbon source |
| 65545 | 30849 | L-arabinose | + | carbon source |
| 65545 | 62345 | L-rhamnose | + | carbon source |
| 65545 | 17716 | lactose | + | carbon source |
| 65545 | 25097 | lyxose | + | carbon source |
| 65545 | 17306 | maltose | + | carbon source |
| 65545 | 29864 | mannitol | + | carbon source |
| 65545 | 37684 | mannose | + | carbon source |
| 65545 | 28053 | melibiose | + | carbon source |
| 65545 | 17268 | myo-inositol | + | carbon source |
| 65545 | 16634 | raffinose | + | carbon source |
| 65545 | 33942 | ribose | - | carbon source |
| 65545 | 17814 | salicin | + | carbon source |
| 65545 | 30911 | sorbitol | + | carbon source |
| 65545 | 27922 | sorbose | - | carbon source |
| 65545 | 28017 | starch | - | hydrolysis |
| 65545 | 17992 | sucrose | + | carbon source |
| 65545 | 27082 | trehalose | + | carbon source |
| 65545 | 32528 | turanose | + | carbon source |
| 65545 | 53423 | tween 40 | - | hydrolysis |
| 65545 | 53425 | tween 60 | - | hydrolysis |
| 65545 | 53426 | tween 80 | - | hydrolysis |
| 65545 | 15318 | xanthine | - | hydrolysis |
antibiotic resistance
| @ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
|---|---|---|---|---|---|---|---|
| 65545 | 17698 | chloramphenicol | yes | yes | 10 µg/mL | ||
| 65545 | 6805 | methacycline | yes | yes | 10 µg/mL | ||
| 65545 | 28971 | ampicillin | yes | yes | 10 µg/mL | ||
| 65545 | 17833 | gentamicin | yes | yes | 10 µg/mL | ||
| 65545 | 17076 | streptomycin | yes | yes | 10 µg/mL |
metabolite production
- @ref: 65545
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 65545 | catalase | + | 1.11.1.6 |
| 65545 | cytochrome oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 65545
- sample type: above ground part of healthy Androsace koso-poljanskii
- sampling date: 1996-08
- geographic location: State Natural Reserve 'Belogorie', Lysye Gory District, Belgorod Region
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_1170.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_461;97_795;98_920;99_1170&stattab=map
- Last taxonomy: Rathayibacter
- 16S sequence: KX758084
- Sequence Identity:
- Total samples: 1589
- soil counts: 271
- aquatic counts: 191
- animal counts: 671
- plant counts: 456
Sequence information
16S sequences
- @ref: 65545
- description: 16S rRNA gene sequence
- accession: KX758084
- database: nuccore
GC content
- @ref: 65545
- GC-content: 71.6
- method: genome sequence analysis
External links
@ref: 65545
culture collection no.: VKM Ac-2121, LMG 22542
literature
- topic: Phylogeny
- Pubmed-ID: 29517475
- title: Rathayibacter oskolensis sp. nov., a novel actinobacterium from Androsace koso-poljanskii Ovcz. (Primulaceae) endemic to the Central Russian Upland.
- authors: Dorofeeva LV, Starodumova IP, Krauzova VI, Prisyazhnaya NV, Vinokurova NG, Lysanskaya VY, Tarlachkov SV, Evtushenko LI
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002681
- year: 2018
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny, Primulaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | journal | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 65545 | Lubov V. Dorofeeva, Irina P. Starodumova, Valentina I. Krauzova, Natalia V. Prisyazhnaya, Natalia G. Vinokurova, Valentina Y. Lysanskaya, Sergey V. Tarlachkov and Lyudmila I. Evtushenko | Rathayibacter oskolensis sp. nov., a novel actinobacterium from Androsace koso-poljanskii Ovcz. (Primulaceae) endemic to the Central Russian Upland | 10.1099/ijsem.0.002681 | IJSEM 68: 1442-1447 2018 | 29517475 |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |