Strain identifier
BacDive ID: 158783
Type strain:
Species: Tessaracoccus aquimaris
Strain Designation: NSG39
Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; NSG39.
NCBI tax ID(s): 1332264 (species)
General
@ref: 65537
BacDive-ID: 158783
keywords: genome sequence, 16S sequence, Bacteria, aerobe, non-halophilic, Gram-positive, coccus-shaped, colony-forming
description: Tessaracoccus aquimaris NSG39 is an aerobe, non-halophilic, Gram-positive bacterium that forms circular colonies and was isolated from intestine of Korean rockfish from a marine aquaculture pond.
NCBI tax id
- NCBI tax id: 1332264
- Matching level: species
strain history
- @ref: 67770
- history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; NSG39.
doi: 10.13145/bacdive158783.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Tessaracoccus
- species: Tessaracoccus aquimaris
- full scientific name: Tessaracoccus aquimaris Tak et al. 2018
@ref: 65537
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Tessaracoccus
species: Tessaracoccus aquimaris
strain designation: NSG39
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell shape | motility | confidence |
---|---|---|---|---|---|
65537 | positive | 1.2-1.7 µm | coccus-shaped | no | |
69480 | no | 93.635 | |||
69480 | positive | 100 |
colony morphology
- @ref: 65537
- colony size: 0.5-1 mm
- colony color: pale yellow
- colony shape: circular
- incubation period: 2 days
- medium used: R2A agar
Culture and growth conditions
culture medium
- @ref: 65537
- name: Reasoner's 2A agar (R2A)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65537 | positive | growth | 15-37 | |
65537 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
65537 | positive | growth | 7-9 | alkaliphile |
65537 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 65537
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.984 |
69481 | no | 97 |
halophily
@ref | halophily level | salt | growth | tested relation | concentration |
---|---|---|---|---|---|
65537 | non-halophilic | NaCl | positive | growth | 0-4 %(w/v) |
65537 | NaCl | positive | optimum | 0 %(w/v) |
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
65537 | 17256 | 2-deoxyadenosine | + | carbon source |
65537 | 30089 | acetate | + | carbon source |
65537 | 16335 | adenosine | + | carbon source |
65537 | 17925 | alpha-D-glucose | + | carbon source |
65537 | 27613 | amygdalin | + | builds acid from |
65537 | 22599 | arabinose | + | assimilation |
65537 | 18305 | arbutin | + | builds acid from |
65537 | 18305 | arbutin | + | carbon source |
65537 | 17057 | cellobiose | + | builds acid from |
65537 | 17108 | D-arabinose | + | builds acid from |
65537 | 18333 | D-arabitol | + | builds acid from |
65537 | 18333 | D-arabitol | + | carbon source |
65537 | 15824 | D-fructose | + | builds acid from |
65537 | 12936 | D-galactose | + | builds acid from |
65537 | 17634 | D-glucose | + | builds acid from |
65537 | 62318 | D-lyxose | + | builds acid from |
65537 | 16899 | D-mannitol | + | builds acid from |
65537 | 16899 | D-mannitol | + | carbon source |
65537 | 16024 | D-mannose | + | builds acid from |
65537 | 16988 | D-ribose | + | builds acid from |
65537 | 16988 | D-ribose | + | carbon source |
65537 | 17924 | D-sorbitol | + | carbon source |
65537 | 65327 | D-xylose | + | builds acid from |
65537 | 65327 | D-xylose | + | carbon source |
65537 | 23652 | dextrin | + | carbon source |
65537 | 16813 | galactitol | + | builds acid from |
65537 | esculin ferric citrate | + | builds acid from | |
65537 | 28066 | gentiobiose | + | builds acid from |
65537 | 24265 | gluconate | + | assimilation |
65537 | 17234 | glucose | + | assimilation |
65537 | 17754 | glycerol | + | builds acid from |
65537 | 17754 | glycerol | + | carbon source |
65537 | 28087 | glycogen | + | builds acid from |
65537 | 28087 | glycogen | + | carbon source |
65537 | 17596 | inosine | + | carbon source |
65537 | 17268 | myo-inositol | + | builds acid from |
65537 | 30849 | L-arabinose | + | builds acid from |
65537 | 30849 | L-arabinose | + | carbon source |
65537 | 18287 | L-fucose | + | builds acid from |
65537 | 62345 | L-rhamnose | + | builds acid from |
65537 | 17266 | L-sorbose | + | builds acid from |
65537 | 17716 | lactose | + | builds acid from |
65537 | 17306 | maltose | + | assimilation |
65537 | 17306 | maltose | + | builds acid from |
65537 | 17306 | maltose | + | carbon source |
65537 | 61993 | maltotriose | + | carbon source |
65537 | 29864 | mannitol | + | assimilation |
65537 | 37684 | mannose | + | assimilation |
65537 | 28053 | melibiose | + | builds acid from |
65537 | 55507 | methyl alpha-D-galactoside | + | carbon source |
65537 | 506227 | N-acetylglucosamine | + | assimilation |
65537 | 506227 | N-acetylglucosamine | + | builds acid from |
65537 | 506227 | N-acetylglucosamine | + | carbon source |
65537 | 17632 | nitrate | + | reduction |
65537 | 32032 | potassium gluconate | + | builds acid from |
65537 | 16634 | raffinose | + | builds acid from |
65537 | 17814 | salicin | + | builds acid from |
65537 | 28017 | starch | + | builds acid from |
65537 | 17992 | sucrose | + | builds acid from |
65537 | 17748 | thymidine | + | carbon source |
65537 | 27082 | trehalose | + | builds acid from |
65537 | 32528 | turanose | + | builds acid from |
65537 | 16704 | uridine | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
65537 | esterase Lipase (C 8) | + | |
65537 | leucine arylamidase | + | 3.4.11.1 |
65537 | valine arylamidase | + | |
65537 | acid phosphatase | + | 3.1.3.2 |
65537 | naphthol-AS-BI-phosphohydrolase | + | |
65537 | alpha-galactosidase | + | 3.2.1.22 |
65537 | alpha-glucosidase | + | 3.2.1.20 |
65537 | beta-galactosidase | + | 3.2.1.23 |
65537 | beta-glucosidase | + | 3.2.1.21 |
65537 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
65537 | alpha-mannosidase | + | 3.2.1.24 |
65537 | alpha-fucosidase | + | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage 65537 C14:0 2.2 65537 C16:0 12.6 65537 C17:0 2.5 65537 C18:0 1.8 65537 C16:0 N alcohol 2.5 65537 C18:1ω9c 0.5 65537 C14:0 iso 3.8 65537 C15:0 iso 2.2 65537 C15:0 anteiso 47.2 65537 C16:0 iso 9.1 65537 C17:0 iso 1.1 65537 antiso-C17:0 5.2 65537 C18:0 iso 0.5 65537 C12:0 aldehyde / unknown ECL 10.928 2.6 65537 C17:1 iso I /C17:1 anteiso B 4.8 65537 C18:1ω7c / C18:1ω6c 0.4 - type of FA analysis: whole cell analysis
- incubation medium: R2A
- incubation temperature: 30
- library/peak naming table: TSBA6
- system: MIS MIDI
- method/protocol: Sasser, 1990
- cutoff value:
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | enrichment culture | enrichment culture composition | enrichment culture duration | enrichment culture temperature | host species |
---|---|---|---|---|---|---|---|---|---|
65537 | intestine of Korean rockfish (Sebastes schlegelii) from a marine aquaculture pond | Republic of Korea | KOR | Asia | R2A | 0.05 % yeast extract, 0.05 % peptone, 0.05 % casamino acids, 0.05 % glucose, 0.05 % soluble starch, 0.03 % sodium pyruvate, 0.03 % K2HPO4, 0.005 % MgSO4 and 1.5 % agar | 7 days | 20 | |
67770 | Intestine of a Korean rockfish, Sebastes schlegelii | Sebastes schlegelii |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Aquaculture |
#Environmental | #Aquatic | #Pond (small) |
#Host | #Fishes | |
#Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_2124.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_1163;97_1367;98_1658;99_2124&stattab=map
- Last taxonomy: Tessaracoccus aquimaris subclade
- 16S sequence: KC884005
- Sequence Identity:
- Total samples: 861
- soil counts: 28
- aquatic counts: 736
- animal counts: 95
- plant counts: 2
Sequence information
16S sequences
- @ref: 65537
- description: 16S rRNA gene sequence
- accession: KC884005
- database: nuccore
Genome sequences
- @ref: 66792
- description: Tessaracoccus aquimaris NSG39
- accession: GCA_001997345
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1332264
GC content
- @ref: 67770
- GC-content: 68.8
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 97 | no |
flagellated | no | 98.017 | no |
gram-positive | yes | 90.87 | yes |
anaerobic | no | 97.958 | yes |
aerobic | yes | 81.201 | yes |
halophile | no | 94.937 | yes |
spore-forming | no | 86.114 | no |
glucose-util | yes | 90.625 | yes |
thermophile | no | 97.41 | no |
motile | no | 92.67 | yes |
glucose-ferment | no | 52.556 | no |
External links
@ref: 65537
culture collection no.: KACC 17540, JCM 19289
literature
- topic: Phylogeny
- Pubmed-ID: 29458549
- title: Tessaracoccus aquimaris sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii, from a marine aquaculture pond.
- authors: Tak EJ, Kim HS, Lee JY, Kang W, Hyun DW, Kim PS, Shin NR, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002626
- year: 2018
- mesh: Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Intestines/*microbiology, Perciformes/*microbiology, *Phylogeny, Ponds, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
65537 | Euon Jung Tak, Hyun Sik Kim, June-Young Lee, Woorim Kang, Dong-Wook Hyun, Pil Soo Kim, Na-Ri Shin and Jin-Woo Bae | Tessaracoccus aquimaris sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii, from a marine aquaculture pond | 10.1099/ijsem.0.002626 | IJSEM 68: 1065-1072 2018 | 29458549 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |