Strain identifier

BacDive ID: 158783

Type strain: Yes

Species: Tessaracoccus aquimaris

Strain Designation: NSG39

Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; NSG39.

NCBI tax ID(s): 1332264 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 8.1 (current version)

General

@ref: 65537

BacDive-ID: 158783

keywords: genome sequence, 16S sequence, Bacteria, aerobe, non-halophilic, Gram-positive, coccus-shaped, colony-forming

description: Tessaracoccus aquimaris NSG39 is an aerobe, non-halophilic, Gram-positive bacterium that forms circular colonies and was isolated from intestine of Korean rockfish from a marine aquaculture pond.

NCBI tax id

  • NCBI tax id: 1332264
  • Matching level: species

strain history

  • @ref: 67770
  • history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; NSG39.

doi: 10.13145/bacdive158783.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Tessaracoccus
  • species: Tessaracoccus aquimaris
  • full scientific name: Tessaracoccus aquimaris Tak et al. 2018

@ref: 65537

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Propionibacteriaceae

genus: Tessaracoccus

species: Tessaracoccus aquimaris

strain designation: NSG39

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
65537positive1.2-1.7 µmcoccus-shapedno
69480no93.635
69480positive100

colony morphology

  • @ref: 65537
  • colony size: 0.5-1 mm
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: R2A agar

Culture and growth conditions

culture medium

  • @ref: 65537
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65537positivegrowth15-37
65537positiveoptimum30mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
65537positivegrowth7-9alkaliphile
65537positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 65537
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69480no99.984
69481no97

halophily

@refhalophily levelsaltgrowthtested relationconcentration
65537non-halophilicNaClpositivegrowth0-4 %(w/v)
65537NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65537172562-deoxyadenosine+carbon source
6553730089acetate+carbon source
6553716335adenosine+carbon source
6553717925alpha-D-glucose+carbon source
6553727613amygdalin+builds acid from
6553722599arabinose+assimilation
6553718305arbutin+builds acid from
6553718305arbutin+carbon source
6553717057cellobiose+builds acid from
6553717108D-arabinose+builds acid from
6553718333D-arabitol+builds acid from
6553718333D-arabitol+carbon source
6553715824D-fructose+builds acid from
6553712936D-galactose+builds acid from
6553717634D-glucose+builds acid from
6553762318D-lyxose+builds acid from
6553716899D-mannitol+builds acid from
6553716899D-mannitol+carbon source
6553716024D-mannose+builds acid from
6553716988D-ribose+builds acid from
6553716988D-ribose+carbon source
6553717924D-sorbitol+carbon source
6553765327D-xylose+builds acid from
6553765327D-xylose+carbon source
6553723652dextrin+carbon source
6553716813galactitol+builds acid from
65537esculin ferric citrate+builds acid from
6553728066gentiobiose+builds acid from
6553724265gluconate+assimilation
6553717234glucose+assimilation
6553717754glycerol+builds acid from
6553717754glycerol+carbon source
6553728087glycogen+builds acid from
6553728087glycogen+carbon source
6553717596inosine+carbon source
6553717268myo-inositol+builds acid from
6553730849L-arabinose+builds acid from
6553730849L-arabinose+carbon source
6553718287L-fucose+builds acid from
6553762345L-rhamnose+builds acid from
6553717266L-sorbose+builds acid from
6553717716lactose+builds acid from
6553717306maltose+assimilation
6553717306maltose+builds acid from
6553717306maltose+carbon source
6553761993maltotriose+carbon source
6553729864mannitol+assimilation
6553737684mannose+assimilation
6553728053melibiose+builds acid from
6553755507methyl alpha-D-galactoside+carbon source
65537506227N-acetylglucosamine+assimilation
65537506227N-acetylglucosamine+builds acid from
65537506227N-acetylglucosamine+carbon source
6553717632nitrate+reduction
6553732032potassium gluconate+builds acid from
6553716634raffinose+builds acid from
6553717814salicin+builds acid from
6553728017starch+builds acid from
6553717992sucrose+builds acid from
6553717748thymidine+carbon source
6553727082trehalose+builds acid from
6553732528turanose+builds acid from
6553716704uridine+carbon source

enzymes

@refvalueactivityec
65537esterase Lipase (C 8)+
65537leucine arylamidase+3.4.11.1
65537valine arylamidase+
65537acid phosphatase+3.1.3.2
65537naphthol-AS-BI-phosphohydrolase+
65537alpha-galactosidase+3.2.1.22
65537alpha-glucosidase+3.2.1.20
65537beta-galactosidase+3.2.1.23
65537beta-glucosidase+3.2.1.21
65537N-acetyl-beta-glucosaminidase+3.2.1.52
65537alpha-mannosidase+3.2.1.24
65537alpha-fucosidase+3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65537C14:02.2
    65537C16:012.6
    65537C17:02.5
    65537C18:01.8
    65537C16:0 N alcohol2.5
    65537C18:1ω9c0.5
    65537C14:0 iso3.8
    65537C15:0 iso2.2
    65537C15:0 anteiso47.2
    65537C16:0 iso9.1
    65537C17:0 iso1.1
    65537antiso-C17:05.2
    65537C18:0 iso0.5
    65537C12:0 aldehyde / unknown ECL 10.9282.6
    65537C17:1 iso I /C17:1 anteiso B4.8
    65537C18:1ω7c / C18:1ω6c0.4
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • incubation temperature: 30
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperaturehost species
65537intestine of Korean rockfish (Sebastes schlegelii) from a marine aquaculture pondRepublic of KoreaKORAsiaR2A0.05 % yeast extract, 0.05 % peptone, 0.05 % casamino acids, 0.05 % glucose, 0.05 % soluble starch, 0.03 % sodium pyruvate, 0.03 % K2HPO4, 0.005 % MgSO4 and 1.5 % agar7 days20
67770Intestine of a Korean rockfish, Sebastes schlegeliiSebastes schlegelii

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Environmental#Aquatic#Pond (small)
#Host#Fishes
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_2124.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_1163;97_1367;98_1658;99_2124&stattab=map
  • Last taxonomy: Tessaracoccus aquimaris subclade
  • 16S sequence: KC884005
  • Sequence Identity:
  • Total samples: 861
  • soil counts: 28
  • aquatic counts: 736
  • animal counts: 95
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 65537
  • description: 16S rRNA gene sequence
  • accession: KC884005
  • database: nuccore

Genome sequences

  • @ref: 66792
  • description: Tessaracoccus aquimaris NSG39
  • accession: GCA_001997345
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1332264

GC content

  • @ref: 67770
  • GC-content: 68.8
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
flagellatedno98.017no
gram-positiveyes90.87yes
anaerobicno97.958yes
aerobicyes81.201yes
halophileno94.937yes
spore-formingno86.114no
glucose-utilyes90.625yes
thermophileno97.41no
motileno92.67yes
glucose-fermentno52.556no

External links

@ref: 65537

culture collection no.: KACC 17540, JCM 19289

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458549
  • title: Tessaracoccus aquimaris sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii, from a marine aquaculture pond.
  • authors: Tak EJ, Kim HS, Lee JY, Kang W, Hyun DW, Kim PS, Shin NR, Bae JW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002626
  • year: 2018
  • mesh: Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Intestines/*microbiology, Perciformes/*microbiology, *Phylogeny, Ponds, Propionibacteriaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65537Euon Jung Tak, Hyun Sik Kim, June-Young Lee, Woorim Kang, Dong-Wook Hyun, Pil Soo Kim, Na-Ri Shin and Jin-Woo BaeTessaracoccus aquimaris sp. nov., isolated from the intestine of a Korean rockfish, Sebastes schlegelii, from a marine aquaculture pond10.1099/ijsem.0.002626IJSEM 68: 1065-1072 201829458549
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1