Strain identifier

BacDive ID: 158778

Type strain: Yes

Species: Longivirga aurantiaca

Strain Designation: X5

NCBI tax ID(s): 1837743 (species)

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General

@ref: 65532

BacDive-ID: 158778

DSM-Number: 116322

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Longivirga aurantiaca X5 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sediment sample of lake.

NCBI tax id

  • NCBI tax id: 1837743
  • Matching level: species

doi: 10.13145/bacdive158778.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Sporichthyales
  • family: Sporichthyaceae
  • genus: Longivirga
  • species: Longivirga aurantiaca
  • full scientific name: Longivirga aurantiaca Qu et al. 2018

@ref: 65532

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Sporichthyales

family: Sporichthyaceae

genus: Longivirga

species: Longivirga aurantiaca

full scientific name: Longivirga aurantiaca Qu et al. 2018

strain designation: X5

type strain: yes

Morphology

cell morphology

  • @ref: 65532
  • gram stain: negative
  • cell length: 1-5 µm
  • cell width: 0.2-0.3 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65532
  • colony size: 1 mm
  • colony color: orange-red
  • colony shape: circular
  • incubation period: 3 days
  • medium used: modified R2A agar

pigmentation

  • @ref: 65532
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowthlink
65532Nutrient agar (NA)no
65532modified R2A agaryes
65532LB (Luria-Bertani) MEDIUMno
125231R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
125231CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium83.pdf

culture temp

@refgrowthtypetemperature
65532positivegrowth4-42
65532positiveoptimum28-37
125231positivegrowth28

culture pH

@refabilitytypepHPH range
65532positivegrowth6-8.5alkaliphile
65532positiveoptimum6.5-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 65532
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentrationhalophily level
65532NaClpositivegrowth0-0.5 %
65532NaClpositiveoptimum0 %non-halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6553285146carboxymethylcellulose+hydrolysis
65532casein+hydrolysis
6553215824D-fructose+carbon source
6553215824D-fructose+energy source
6553212936D-galactose+carbon source
6553212936D-galactose+energy source
6553217634D-glucose+carbon source
6553217634D-glucose+energy source
6553216024D-mannose+carbon source
6553216024D-mannose+energy source
6553216988D-ribose+carbon source
6553216988D-ribose+energy source
6553217924D-sorbitol-carbon source
6553217924D-sorbitol-energy source
6553265327D-xylose+carbon source
6553265327D-xylose+energy source
65532egg yolk+hydrolysis
655325291gelatin+hydrolysis
6553217234glucose-fermentation
6553217234glucose+fermentation
6553217234glucose+oxidation
6553217754glycerol-carbon source
6553217754glycerol-energy source
6553230849L-arabinose-carbon source
6553230849L-arabinose-energy source
6553262345L-rhamnose+carbon source
6553262345L-rhamnose+energy source
6553217716lactose+carbon source
6553217716lactose+energy source
6553217306maltose+carbon source
6553217306maltose+energy source
6553229864mannitol-carbon source
6553229864mannitol-energy source
6553217632nitrate-reduction
6553216634raffinose-carbon source
6553216634raffinose-energy source
6553228017starch+hydrolysis
6553217992sucrose+carbon source
6553217992sucrose+energy source
6553227082trehalose+carbon source
6553227082trehalose+energy source
6553253426tween 80+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6553215688acetoinno
6553216136hydrogen sulfideyes
6553235581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6553217234glucose-
6553215688acetoin-

enzymes

@refvalueactivityec
65532catalase+1.11.1.6
65532cytochrome oxidase-1.9.3.1
65532urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture temperatureisolation procedure
65532sediment sample of lake2015-04Taihu Lake, Jiangsu ProvinceChinaCHNAsiamodified R2Ato 1 l of supernatant liquid 0.5 g yeast extract, 0.5 g tryptone, 0.5 g casein hydrolysate, 0.5 g glucose, 0.5 g soluble starch, 0.3 g K2HPO4 . 3H2O, 0.05 g MgSO4 . 7H2O and 15 g agar. pH was adjusted to 7.228300 g soil added to 1 l water, boiled for 10 min and centrifuged at 1500 xg for 5 min.
125231Lake sedimentTaihu Lake, JiangsuChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_47952.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_15705;97_27161;98_34585;99_47952&stattab=map
  • Last taxonomy: Longivirga aurantiaca subclade
  • 16S sequence: KU055631
  • Sequence Identity:
  • Total samples: 1180
  • soil counts: 75
  • aquatic counts: 1012
  • animal counts: 34
  • plant counts: 59

Sequence information

16S sequences

  • @ref: 65532
  • description: Longivirga aurantiaca strain X5 16S ribosomal RNA gene, partial sequence
  • accession: KU055631
  • database: nuccore

GC content

  • @ref: 65532
  • GC-content: 74.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65532

culture collection no.: CGMCC 4.7317, NBRC 112237, DSM 116322

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458497
  • title: A novel genus of the class Actinobacteria, Longivirga aurantiaca gen. nov., sp. nov., isolated from lake sediment.
  • authors: Qu JH, Zhang LJ, Fu YH, Li XD, Li HF, Tian HL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002615
  • year: 2018
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65532Jian-Hang Qu, Lu-Jie Zhang, Yun-Hui Fu, Xiao-Dan Li, Hai-Feng Li and Hai-Long TianA novel genus of the class Actinobacteria, Longivirga aurantiaca gen. nov., sp. nov., isolated from lake sediment10.1099/ijsem.0.002615IJSEM 68: 942-946 201829458497
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
125231Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-116322Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 116322)