Strain identifier
BacDive ID: 158770
Type strain:
Species: Micromonospora luteiviridis
Strain Designation: SGB14
NCBI tax ID(s): 709896 (species)
General
@ref: 65525
BacDive-ID: 158770
DSM-Number: 105362
keywords: 16S sequence, Bacteria, aerobe, chemoorganotroph, spore-forming, Gram-positive, pigmented
description: Micromonospora luteiviridis SGB14 is an aerobe, chemoorganotroph, spore-forming bacterium that builds hyphae and has a green diffusible pigmentation.
NCBI tax id
- NCBI tax id: 709896
- Matching level: species
doi: 10.13145/bacdive158770.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora luteiviridis
- full scientific name: Micromonospora luteiviridis Carro et al. 2018
@ref: 65525
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micromonosporales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora luteiviridis
strain designation: SGB14
type strain: yes
Morphology
cell morphology
- @ref: 65525
- gram stain: positive
- motility: no
colony morphology
- @ref: 65525
- colony color: light yellow-orange and greenish-brown
multicellular morphology
- @ref: 65525
- forms multicellular complex: yes
- complex name: hyphae
pigmentation
- @ref: 65525
- production: yes
- color: green diffusible
Culture and growth conditions
culture medium
@ref | name | growth |
---|---|---|
65525 | ISP 2 | yes |
65525 | TSB | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65525 | positive | growth | 4-45 | |
65525 | positive | optimum | 28 | mesophilic |
culture pH
- @ref: 65525
- ability: positive
- type: growth
- pH: 5.5-9
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 65525
- oxygen tolerance: aerobe
nutrition type
- @ref: 65525
- type: chemoorganotroph
spore formation
- @ref: 65525
- spore formation: yes
halophily
- @ref: 65525
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 3 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
65525 | 18305 | arbutin | + | degradation |
65525 | casein | + | degradation | |
65525 | 17057 | cellobiose | - | carbon source |
65525 | 15824 | D-fructose | - | carbon source |
65525 | 12936 | D-galactose | + | carbon source |
65525 | 18024 | D-galacturonic acid | - | carbon source |
65525 | 17634 | D-glucose | + | carbon source |
65525 | 16024 | D-mannose | - | carbon source |
65525 | 16634 | raffinose | - | carbon source |
65525 | 65327 | D-xylose | - | carbon source |
65525 | 17113 | erythritol | - | carbon source |
65525 | 4853 | esculin | + | degradation |
65525 | 5291 | gelatin | + | degradation |
65525 | 24265 | gluconate | - | carbon source |
65525 | 17859 | glutaric acid | - | carbon source |
65525 | 16977 | L-alanine | - | carbon source |
65525 | 30849 | L-arabinose | - | carbon source |
65525 | 16467 | L-arginine | + | carbon source |
65525 | 15971 | L-histidine | - | carbon source |
65525 | 18019 | L-lysine | + | carbon source |
65525 | 17203 | L-proline | + | carbon source |
65525 | 62345 | L-rhamnose | + | carbon source |
65525 | 17115 | L-serine | - | carbon source |
65525 | 17266 | L-sorbose | - | carbon source |
65525 | 17895 | L-tyrosine | + | degradation |
65525 | 16414 | L-valine | + | carbon source |
65525 | 17306 | maltose | - | carbon source |
65525 | 6731 | melezitose | - | carbon source |
65525 | 28053 | melibiose | - | carbon source |
65525 | 17272 | propionate | - | carbon source |
65525 | 26490 | quinate | - | carbon source |
65525 | 17814 | salicin | + | carbon source |
65525 | 30911 | sorbitol | - | carbon source |
65525 | 28017 | starch | + | degradation |
65525 | 17992 | sucrose | + | carbon source |
65525 | 27082 | trehalose | + | carbon source |
65525 | 53424 | tween 20 | + | degradation |
65525 | 53426 | tween 80 | - | degradation |
65525 | 16199 | urea | - | degradation |
65525 | 37166 | xylan | + | degradation |
65525 | 17151 | xylitol | - | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
65525 | cytochrome oxidase | - | 1.9.3.1 |
65525 | catalase | + | 1.11.1.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage 65525 C15:0 0.6 65525 C16:0 0.4 65525 C17:0 1.8 65525 C18:0 0.8 65525 C19:0 0.2 65525 C13:0 iso 0.2 65525 C14:0 iso 0.3 65525 C15:0 iso 17.3 65525 C16:0 iso 14.3 65525 C17:0 iso 5.4 65525 C18:0 iso 0.4 65525 C15:0 anteiso 1.8 65525 C17:0 anteiso 5.4 65525 C17:1ω8c 10 65525 C18:1ω7c 0.3 65525 C18:1ω9c 2.9 65525 C15:1 iso G 1.9 65525 iso-C16:1G 3.1 65525 C18:1 iso H 0.5 65525 C17:1 iso ω9c 23 65525 C17:1 anteiso ω9c 2.1 65525 10-methyl C17:0 4.1 65525 TBSA 10-methyl C18:0 1.1 65525 C16:1 2OH 0.3 65525 C17:0 3OH 0.1 65525 C16:1ω7c / C15:0 iso 2OH 0.3 65525 C19:1ω11c / C19:1ω9c 0.9 - type of FA analysis: whole cell analysis
- incubation medium: TSB
- incubation temperature: 28
- incubation time: 5
- library/peak naming table: ACTINO
- system: MIS MIDI
- method/protocol: Sasser, 1990
Isolation, sampling and environmental information
isolation
- @ref: 65525
- sample type: root nodule of Pisum sativum
- geographic location: Salamanca
- country: Spain
- origin.country: ESP
- continent: Europe
- enrichment culture: ISP 2
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root nodule |
Sequence information
16S sequences
- @ref: 65525
- description: 16S rRNA gene sequence
- accession: FN658669
- database: nuccore
GC content
- @ref: 65525
- GC-content: 71.3
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 65525
culture collection no.: CECT 9370, DSM 105362
literature
- topic: Phylogeny
- Pubmed-ID: 29148367
- title: Micromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules.
- authors: Carro L, Veyisoglu A, Riesco R, Sproer C, Klenk HP, Sahin N, Trujillo ME
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002490
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Micromonospora/*classification/genetics/isolation & purification, Peas/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spain
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
65525 | Lorena Carro, Aysel Veyisoglu, Raúl Riesco, Cathrin Spröer, Hans-Peter Klenk, Nevzat Sahin and Martha E. Trujillo | Micromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules | 10.1099/ijsem.0.002490 | IJSEM 68: 248-253 2018 | 29148367 |