Strain identifier

BacDive ID: 158770

Type strain: Yes

Species: Micromonospora luteiviridis

Strain Designation: SGB14

NCBI tax ID(s): 709896 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65525

BacDive-ID: 158770

DSM-Number: 105362

keywords: 16S sequence, Bacteria, aerobe, chemoorganotroph, spore-forming, Gram-positive, pigmented

description: Micromonospora luteiviridis SGB14 is an aerobe, chemoorganotroph, spore-forming bacterium that builds hyphae and has a green diffusible pigmentation.

NCBI tax id

  • NCBI tax id: 709896
  • Matching level: species

doi: 10.13145/bacdive158770.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora luteiviridis
  • full scientific name: Micromonospora luteiviridis Carro et al. 2018

@ref: 65525

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micromonosporales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora luteiviridis

strain designation: SGB14

type strain: yes

Morphology

cell morphology

  • @ref: 65525
  • gram stain: positive
  • motility: no

colony morphology

  • @ref: 65525
  • colony color: light yellow-orange and greenish-brown

multicellular morphology

  • @ref: 65525
  • forms multicellular complex: yes
  • complex name: hyphae

pigmentation

  • @ref: 65525
  • production: yes
  • color: green diffusible

Culture and growth conditions

culture medium

@refnamegrowth
65525ISP 2yes
65525TSByes

culture temp

@refgrowthtypetemperaturerange
65525positivegrowth4-45
65525positiveoptimum28mesophilic

culture pH

  • @ref: 65525
  • ability: positive
  • type: growth
  • pH: 5.5-9
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 65525
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 65525
  • type: chemoorganotroph

spore formation

  • @ref: 65525
  • spore formation: yes

halophily

  • @ref: 65525
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6552518305arbutin+degradation
65525casein+degradation
6552517057cellobiose-carbon source
6552515824D-fructose-carbon source
6552512936D-galactose+carbon source
6552518024D-galacturonic acid-carbon source
6552517634D-glucose+carbon source
6552516024D-mannose-carbon source
6552516634raffinose-carbon source
6552565327D-xylose-carbon source
6552517113erythritol-carbon source
655254853esculin+degradation
655255291gelatin+degradation
6552524265gluconate-carbon source
6552517859glutaric acid-carbon source
6552516977L-alanine-carbon source
6552530849L-arabinose-carbon source
6552516467L-arginine+carbon source
6552515971L-histidine-carbon source
6552518019L-lysine+carbon source
6552517203L-proline+carbon source
6552562345L-rhamnose+carbon source
6552517115L-serine-carbon source
6552517266L-sorbose-carbon source
6552517895L-tyrosine+degradation
6552516414L-valine+carbon source
6552517306maltose-carbon source
655256731melezitose-carbon source
6552528053melibiose-carbon source
6552517272propionate-carbon source
6552526490quinate-carbon source
6552517814salicin+carbon source
6552530911sorbitol-carbon source
6552528017starch+degradation
6552517992sucrose+carbon source
6552527082trehalose+carbon source
6552553424tween 20+degradation
6552553426tween 80-degradation
6552516199urea-degradation
6552537166xylan+degradation
6552517151xylitol-carbon source

enzymes

@refvalueactivityec
65525cytochrome oxidase-1.9.3.1
65525catalase+1.11.1.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65525C15:00.6
    65525C16:00.4
    65525C17:01.8
    65525C18:00.8
    65525C19:00.2
    65525C13:0 iso0.2
    65525C14:0 iso0.3
    65525C15:0 iso17.3
    65525C16:0 iso14.3
    65525C17:0 iso5.4
    65525C18:0 iso0.4
    65525C15:0 anteiso1.8
    65525C17:0 anteiso5.4
    65525C17:1ω8c10
    65525C18:1ω7c0.3
    65525C18:1ω9c2.9
    65525C15:1 iso G1.9
    65525iso-C16:1G3.1
    65525C18:1 iso H0.5
    65525C17:1 iso ω9c23
    65525C17:1 anteiso ω9c2.1
    6552510-methyl C17:04.1
    65525TBSA 10-methyl C18:01.1
    65525C16:1 2OH0.3
    65525C17:0 3OH0.1
    65525C16:1ω7c / C15:0 iso 2OH0.3
    65525C19:1ω11c / C19:1ω9c0.9
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB
  • incubation temperature: 28
  • incubation time: 5
  • library/peak naming table: ACTINO
  • system: MIS MIDI
  • method/protocol: Sasser, 1990

Isolation, sampling and environmental information

isolation

  • @ref: 65525
  • sample type: root nodule of Pisum sativum
  • geographic location: Salamanca
  • country: Spain
  • origin.country: ESP
  • continent: Europe
  • enrichment culture: ISP 2

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

Sequence information

16S sequences

  • @ref: 65525
  • description: 16S rRNA gene sequence
  • accession: FN658669
  • database: nuccore

GC content

  • @ref: 65525
  • GC-content: 71.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 65525

culture collection no.: CECT 9370, DSM 105362

literature

  • topic: Phylogeny
  • Pubmed-ID: 29148367
  • title: Micromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules.
  • authors: Carro L, Veyisoglu A, Riesco R, Sproer C, Klenk HP, Sahin N, Trujillo ME
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002490
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Micromonospora/*classification/genetics/isolation & purification, Peas/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spain
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65525Lorena Carro, Aysel Veyisoglu, Raúl Riesco, Cathrin Spröer, Hans-Peter Klenk, Nevzat Sahin and Martha E. TrujilloMicromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules10.1099/ijsem.0.002490IJSEM 68: 248-253 201829148367