Strain identifier

BacDive ID: 158748

Type strain: Yes

Species: Lactococcus petauri

Strain Designation: 159469

Strain history: CIP <- 2018, LMG <- 2017, L. Goodman, Cornell Univ., New York, USA: strain 159469 <- 2016, C. Miller, North Dakota State Univ., USA

NCBI tax ID(s): 1940789 (species)

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General

@ref: 67693

BacDive-ID: 158748

DSM-Number: 104842

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-positive, coccus-shaped, animal pathogen

description: Lactococcus petauri 159469 is a facultative anaerobe, Gram-positive, coccus-shaped animal pathogen that was isolated from facial abscess swab of a sugar glider .

NCBI tax id

  • NCBI tax id: 1940789
  • Matching level: species

strain history

@refhistory
67693<- L. Goodman; Cornell University, Ithaca, NY, USA; 159469<-C. Miller; North Dakota Veterinary Diagnostic Laboratory
121787CIP <- 2018, LMG <- 2017, L. Goodman, Cornell Univ., New York, USA: strain 159469 <- 2016, C. Miller, North Dakota State Univ., USA

doi: 10.13145/bacdive158748.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Lactococcus
  • species: Lactococcus petauri
  • full scientific name: Lactococcus petauri Goodman et al. 2017

@ref: 67693

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Lactococcus

species: Lactococcus petauri

full scientific name: Lactococcus petauri Goodman et al. 2017

strain designation: 159469

type strain: yes

Morphology

cell morphology

@refgram staincell shape
65499positivecoccus-shaped
121787positivecoccus-shaped

colony morphology

@reftype of hemolysishemolysis abilitycolony colormedium usedcolony shapeincubation period
65499beta1orangeTSA
65499creamM17circular1 day

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
65499Trypticase Soy Agar (TSA)yeswith 5% sheep blodd
65499M17yes
67693TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
121787CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
65499positivegrowth6-40
65499nogrowth4psychrophilic
65499nogrowth45thermophilic
65499positiveoptimum20-40
67693positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
65499positivegrowth4-10alkaliphile
65499nogrowth3
65499positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 65499
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
65499NaClpositivegrowth7 %(w/v)
65499NaClpositiveoptimum0-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6549927613amygdalin+builds acid from
6549918305arbutin+builds acid from
6549917057cellobiose+builds acid from
6549915824D-fructose+builds acid from
6549912936D-galactose+builds acid from
6549917634D-glucose+builds acid from
6549916899D-mannitol+/-builds acid from
6549916024D-mannose+builds acid from
6549916988D-ribose+builds acid from
6549916443D-tagatose+builds acid from
6549965327D-xylose-builds acid from
654994853esculin+builds acid from
6549928066gentiobiose+builds acid from
6549917716lactose-builds acid from
6549917306maltose+builds acid from
654996731melezitose-builds acid from
6549928053melibiose-builds acid from
65499320061methyl alpha-D-glucopyranoside-builds acid from
6549943943methyl alpha-D-mannoside-builds acid from
65499506227N-acetylglucosamine+builds acid from
6549932032potassium gluconate+/-builds acid from
6549916634raffinose-builds acid from
6549917814salicin+builds acid from
6549928017starch-builds acid from
6549917992sucrose+builds acid from
6549927082trehalose+builds acid from
6549932528turanose-builds acid from

enzymes

@refvalueactivityec
65499cytochrome oxidase-1.9.3.1
65499catalase-1.11.1.6
65499esterase (C 4)+
65499esterase Lipase (C 8)+
65499leucine arylamidase+3.4.11.1
65499alpha-chymotrypsin+3.4.21.1
65499acid phosphatase+3.1.3.2
65499alpha-glucosidase+3.2.1.20
65499beta-glucosidase+3.2.1.21
65499valine arylamidase+/-
65499naphthol-AS-BI-phosphohydrolase+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
65499facial abscess swab of a sugar glider (Petaurus breviceps)
121787Animal, Phalanger glider, facial abscessFargo, North DakotaUnited States of AmericaUSANorth America2016-09-06

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Abscess
#Host Body-Site#Other#Head
#Infection#Patient#Swab
#Host#Mammals

taxonmaps

  • @ref: 69479
  • File name: preview.99_274.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_58;96_192;97_208;98_233;99_274&stattab=map
  • Last taxonomy: Lactococcus
  • 16S sequence: KY548925
  • Sequence Identity:
  • Total samples: 95930
  • soil counts: 3482
  • aquatic counts: 8187
  • animal counts: 81994
  • plant counts: 2267

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
67693yes, in single cases1Risk group (German classification)
1217871Risk group (French classification)

Sequence information

16S sequences

  • @ref: 65499
  • description: 16S rRNA gene sequence
  • accession: KY548925
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactococcus petauri 159469GCA_002154895contigncbi1940789
66792Lactococcus petauri 1594692791355161draftimg1940789

GC content

@refGC-contentmethod
6549937.7genome sequence analysis
6769337.7sequence analysis

External links

@ref: 67693

culture collection no.: LMG 30040, DSM 104842, CIP 111606

straininfo link

  • @ref: 111334
  • straininfo: 405118

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28945531Lactococcus petauri sp. nov., isolated from an abscess of a sugar glider.Goodman LB, Lawton MR, Franklin-Guild RJ, Anderson RR, Schaan L, Thachil AJ, Wiedmann M, Miller CB, Alcaine SD, Kovac JInt J Syst Evol Microbiol10.1099/ijsem.0.0023032017Abscess/*microbiology, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lactococcus/*classification/genetics/isolation & purification, Marsupialia/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny32174973Complete Genome Insights into Lactococcus petauri CF11 Isolated from a Healthy Human Gut Using Second- and Third-Generation Sequencing.Ou YJ, Ren QQ, Fang ST, Wu JG, Jiang YX, Chen YR, Zhong Y, Wang DD, Zhang GXFront Genet10.3389/fgene.2020.001192020

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65499Laura B. Goodman, Marie R. Lawton, Rebecca J. Franklin-Guild, Renee R. Anderson, Lynn Schaan, Anil J. Thachil, Martin Wiedmann, Claire B. Miller, Samuel D. Alcaine and Jasna KovacLactococcus petauri sp. nov., isolated from an abscess of a sugar glider10.1099/ijsem.0.002303IJSEM 67: 4397-4404 201728945531
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67693Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104842Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104842)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
111334Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405118.1
121787Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111606Collection of Institut Pasteur (CIP 111606)