Strain identifier

BacDive ID: 158702

Type strain: Yes

Species: Actinorectispora metalli

Strain Designation: KC 198

Strain history: CCTCC AA 2015043 <-- Y.-R. Cao; Kunming Univ., China; KC 198.

NCBI tax ID(s): 1873423 (species)

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General

@ref: 65442

BacDive-ID: 158702

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, pigmented

description: Actinorectispora metalli KC 198 is an aerobe, Gram-positive bacterium that has a dark brown diffusible pigment pigmentation and was isolated from From rare earth mine.

NCBI tax id

  • NCBI tax id: 1873423
  • Matching level: species

strain history

@refhistory
67771<- Yan-Ru Cao, Kunming Univ., China
67770CCTCC AA 2015043 <-- Y.-R. Cao; Kunming Univ., China; KC 198.

doi: 10.13145/bacdive158702.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinorectispora
  • species: Actinorectispora metalli
  • full scientific name: Actinorectispora metalli Cao et al. 2018

@ref: 65442

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Pseudonocardiales

family: Pseudonocardiaceae

genus: Actinorectispora

species: Actinorectispora metalli

strain designation: KC 198

type strain: yes

Morphology

cell morphology

  • @ref: 65442
  • gram stain: positive
  • motility: no

pigmentation

  • @ref: 65442
  • production: yes
  • name: dark brown diffusible pigment

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
65442positivegrowth10-45
65442positiveoptimum28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
65442positivegrowth6-8
65442positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65442aerobe
67771aerobe

halophily

  • @ref: 65442
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %(w/v)

observation

@refobservation
65442aerial mycelium is produced
65442substrate mycelium ranging in colour from deep yellow to strong brown on most media
65442aerial hyphae differentiate into long, straight chains of cylindrical spores
65442the predominant respiratory quinone is MK-9(H4)
67770quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6544217057cellobiose+carbon source
6544262968cellulose-hydrolysis
6544217108D-arabinose-carbon source
6544216899D-mannitol-carbon source
6544216024D-mannose+carbon source
6544217924D-sorbitol+carbon source
6544217113erythritol-carbon source
6544228757fructose+builds acid from
6544228757fructose+carbon source
6544233984fucose+carbon source
6544228260galactose+builds acid from
6544228260galactose+carbon source
654425291gelatin+hydrolysis
6544217234glucose+carbon source
6544217754glycerol+carbon source
6544217368hypoxanthine+nitrogen source
6544217268myo-inositol+carbon source
6544216977L-alanine+nitrogen source
6544216467L-arginine-nitrogen source
6544217196L-asparagine+nitrogen source
6544217561L-cysteine+nitrogen source
6544215971L-histidine-nitrogen source
6544217203L-proline+nitrogen source
6544216828L-tryptophan-nitrogen source
6544217895L-tyrosine+nitrogen source
6544216414L-valine-nitrogen source
6544217716lactose+builds acid from
6544217716lactose+carbon source
6544225115malate+carbon source
6544217306maltose+builds acid from
6544217306maltose+carbon source
6544228053melibiose+carbon source
65442506227N-acetylglucosamine+carbon source
6544217632nitrate+reduction
6544218401phenylacetate-carbon source
6544216634raffinose-carbon source
6544226546rhamnose-carbon source
6544233942ribose+builds acid from
6544233942ribose+carbon source
6544217814salicin-carbon source
6544253258sodium citrate+carbon source
6544250144sodium pyruvate+carbon source
6544263675sodium succinate+carbon source
6544227922sorbose+builds acid from
6544227922sorbose+carbon source
6544228017starch-hydrolysis
6544217992sucrose+carbon source
6544253425tween 60+hydrolysis
6544253426tween 80+hydrolysis
6544215318xanthine+nitrogen source
6544217151xylitol-carbon source
6544218222xylose+carbon source

metabolite production

  • @ref: 65442
  • Chebi-ID: 15138
  • metabolite: sulfide
  • production: no

enzymes

@refvalueactivityec
65442cytochrome oxidase-1.9.3.1
65442catalase+1.11.1.6
65442urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
67771From rare earth mineinner MogoliaChinaCHNAsia
65442a rare earth mineInner MongoliaChinaCHNAsiasodium pyruvate mediumcomposition per litre: 10g sodium pyruvate, 1g (NH4) 2SO4, 2g CaCl2, 0.24 g MgSO4 7H2O, 1g NaCl, 1g K2HPO4, 20 g agar, the final pH was adjusted to 7.2 with NaOH or HCl30 days28
67770Rare earth mine in Inner MongoliaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Engineered#Industrial

Sequence information

16S sequences

  • @ref: 65442
  • description: 16S rRNA gene sequence
  • accession: KU992914
  • database: nuccore

GC content

  • @ref: 65442
  • GC-content: 66.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65442

culture collection no.: CCTCC AA 2015043, KCTC 39718, JCM 33573

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458498
  • title: Actinorectispora metalli sp. nov., a novel actinomycete isolated from a mine and emended description of the genus Actinorectispora.
  • authors: Cao YR, He ZK, Guo Y, Yang XX, Liang LM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002620
  • year: 2018
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65442Yan-Ru Cao, Zhong-Kan He, Yan Guo, Xuan-Xuan Yang, Lian-Ming LiangActinorectispora metalli sp. nov., a novel actinomycete isolated from a mine and emended description of the genus Actinorectispora10.1099/ijsem.0.002620IJSEM 68: 1023-1027 201829458498
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc