Strain identifier

BacDive ID: 158701

Type strain: Yes

Species: Aquimarina spongiicola

Strain Designation: 122CH820-2

NCBI tax ID(s): 2093342 (species)

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General

@ref: 65440

BacDive-ID: 158701

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Aquimarina spongiicola 122CH820-2 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from spongin.

NCBI tax id

  • NCBI tax id: 2093342
  • Matching level: species

doi: 10.13145/bacdive158701.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina spongiicola
  • full scientific name: Aquimarina spongiicola Choi et al. 2018

@ref: 65440

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina spongiicola

strain designation: 122CH820-2

type strain: yes

Morphology

cell morphology

  • @ref: 65440
  • gram stain: negative
  • cell length: 2.5-4.0 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 65440
  • colony size: 1-2 mm
  • colony color: orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: marine agar

pigmentation

  • @ref: 65440
  • production: no
  • name: Flexirubin-type pigments

Culture and growth conditions

culture medium

@refnamegrowth
65440Marine agar (MA)yes
65440Trypticase soy agarno
65440MacConkey agarno
65440lysogeny brothno
65440Reasoner's 2A agarno

culture temp

@refgrowthtypetemperaturerange
65440positivegrowth20-30
65440nogrowth18psychrophilic
65440nogrowth37mesophilic
65440positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
65440positivegrowth6-10alkaliphile
65440positiveoptimum6

Physiology and metabolism

oxygen tolerance

  • @ref: 65440
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65440
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65440NaClpositivegrowth1-7 %(w/v)
65440KClpositiveoptimum3 %(w/v)

observation

  • @ref: 65440
  • observation: MK-6 is the only respiratory quinone

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6544030849L-arabinose+carbon source
65440370543-hydroxybutyrate-carbon source
65440178794-hydroxybenzoate+carbon source
65440581435-dehydro-D-gluconate-carbon source
6544027689decanoate-carbon source
65440casein+hydrolysis
6544017634D-glucose+carbon source
6544016899D-mannitol+carbon source
6544016024D-mannose+carbon source
6544017924D-sorbitol+carbon source
6544024996lactate+carbon source
6544016991dna-hydrolysis
6544017268myo-inositol-carbon source
6544017203L-proline+carbon source
6544062345L-rhamnose-carbon source
6544017115L-serine+carbon source
6544017632nitrate+reduction
6544017272propionate-carbon source
6544028017starch+hydrolysis
6544053426tween 80-hydrolysis
6544031011valerate+carbon source

enzymes

@refvalueactivityec
65440cytochrome oxidase+1.9.3.1
65440catalase+1.11.1.6
65440arginine dihydrolase-3.5.3.6
65440protease+
65440urease-3.5.1.5
65440N-acetyl-beta-glucosaminidase-3.2.1.52
65440alpha-chymotrypsin-3.4.21.1
65440cystine arylamidase-3.4.11.3
65440esterase (C 4)+
65440esterase Lipase (C 8)+
65440alpha-glucosidase-3.2.1.20
65440leucine arylamidase+3.4.11.1
65440trypsin-3.4.21.4

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65440C15:0 iso36.9
    65440C15:0 iso 3OH6.1
    65440C15:1 iso G11
    65440C16:0 iso1.5
    65440C16:0 iso 3OH1
    65440C17:0 iso 3OH25.9
    65440C16:0 3OH1
    65440C 16 : 1ω7c/C16:1ω6c4.1
    65440iso-C17:1ω9c/C16:0 10-methyl6
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • incubation temperature: 25
  • incubation time: 3
  • software version: Sherlock 6.0
  • library/peak naming table: TSBA60
  • system: MIS MIDI
  • instrument: 6890 chromatograph (Hewlett Packard)
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 65440
  • sample type: spongin
  • geographic location: Jeju-Do
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • enrichment culture: marine agar
  • enrichment culture duration: 3 days
  • enrichment culture temperature: 30

taxonmaps

  • @ref: 69479
  • File name: preview.99_21264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_8900;97_10696;98_16037;99_21264&stattab=map
  • Last taxonomy: Aquimarina
  • 16S sequence: KY451769
  • Sequence Identity:
  • Total samples: 12
  • aquatic counts: 12

Sequence information

16S sequences

  • @ref: 65440
  • description: 16S rRNA gene sequence
  • accession: KY451769
  • database: nuccore

GC content

  • @ref: 65440
  • GC-content: 35.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65440

culture collection no.: KACC 19274, LMG 30078

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458468
  • title: Aquimarina spongiicola sp. nov., isolated from spongin.
  • authors: Choi KD, Lee GE, Park JS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002575
  • year: 2018
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65440Kang Duk Choi, Ga-Eun Lee, Jin-Sook ParkAquimarina spongiicola sp. nov., isolated from spongin10.1099/ijsem.0.002575IJSEM 68: 990-994 201829458468
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/