Strain identifier

BacDive ID: 158688

Type strain: Yes

Species: Planococcus salinus

Strain Designation: LCB217

Strain history: <- Longzhan GAN, Sichuan Univ.

NCBI tax ID(s): 1848460 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65424

BacDive-ID: 158688

keywords: genome sequence, 16S sequence, Bacteria, aerobe, moderately halophilic, Gram-positive, motile, coccus-shaped, colony-forming

description: Planococcus salinus LCB217 is an aerobe, moderately halophilic, Gram-positive bacterium that forms circular colonies and was isolated from a saline-alkali soil of Jade Gate Pass.

NCBI tax id

  • NCBI tax id: 1848460
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Longzhan GAN, Sichuan Univ.

doi: 10.13145/bacdive158688.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus salinus
  • full scientific name: Planococcus salinus Gan et al. 2018

@ref: 65424

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Planococcaceae

genus: Planococcus

species: Planococcus salinus

strain designation: LCB217

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
65424positive0.6-1.0 µmcoccus-shapedyes
67771coccus-shapedyes
67771positive

colony morphology

  • @ref: 65424
  • colony size: 1-2 mm
  • colony color: reddish-orange
  • colony shape: circular
  • incubation period: 3 days
  • medium used: LB

Culture and growth conditions

culture medium

  • @ref: 65424
  • name: LB (Luria-Bertani) MEDIUM
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65424positivegrowth10-45
65424positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
65424positivegrowth7-9alkaliphile
65424positiveoptimum9

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65424aerobe
67771aerobe

halophily

@refhalophily levelsaltgrowthtested relationconcentration
65424moderately halophilic
65424NaClpositivegrowth3-15 %
65424NaClpositiveoptimum3-5 %

observation

@refobservation
65424the peptidoglycan type is A4a (L-Lys-D-Glu)
65424the predominant menaquinones are MK-7 and MK-8
65424the polar lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, one unidentified phospholipid, one unidentified aminophospholipid and one unidentified lipid
67771quinones: MK-7, MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6542418287L-fucose+carbon source
6542416004(R)-lactate+carbon source
6542415588D-malate+carbon source
6542416651(S)-lactate-carbon source
65424739183-O-methyl-D-glucose+carbon source
65424181014-hydroxyphenylacetic acid-carbon source
6542430089acetate+carbon source
6542417925alpha-D-glucose+carbon source
65424645522-hydroxybutyrate-carbon source
6542473673alpha-hydroxyglutarate-gamma-lactone-carbon source
654248295beta-hydroxybutyrate+carbon source
6542473706bromosuccinate-carbon source
6542417057cellobiose-builds acid from
6542462968cellulose-hydrolysis
6542416947citrate-carbon source
6542418333D-arabitol+carbon source
6542429990D-aspartate-carbon source
6542417057cellobiose+carbon source
6542415824D-fructose+carbon source
6542478697D-fructose 6-phosphate+carbon source
6542428847D-fucose+carbon source
6542412936D-galactose-builds acid from
6542412936D-galactose+carbon source
6542418024D-galacturonic acid-carbon source
654248391D-gluconate-carbon source
6542414314D-glucose 6-phosphate-carbon source
6542415748D-glucuronate-carbon source
6542416899D-mannitol-builds acid from
6542416899D-mannitol+carbon source
6542416024D-mannose+carbon source
6542433801D-saccharate-carbon source
6542416523D-serine-carbon source
6542417924D-sorbitol-builds acid from
6542417924D-sorbitol+carbon source
6542415740formate+carbon source
6542428757fructose-builds acid from
6542416865gamma-aminobutyric acid-carbon source
65424495056gamma-cyclodextrin+carbon source
654245291gelatin-carbon source
654245291gelatin-hydrolysis
6542428066gentiobiose+carbon source
6542417234glucose-builds acid from
6542432323glucuronamide+carbon source
6542417754glycerol+carbon source
6542470744glycine-proline-carbon source
6542417596inosine+carbon source
65424L-alanine 4-nitroanilide-carbon source
6542416467L-arginine-carbon source
6542429991L-aspartate-carbon source
6542417464L-galactonic acid gamma-lactone+carbon source
6542429985L-glutamate-carbon source
6542415971L-histidine+carbon source
6542415589L-malate-carbon source
6542418183L-pyroglutamic acid-carbon source
6542462345L-rhamnose+carbon source
6542417115L-serine-carbon source
6542417716lactose+carbon source
6542417306maltose-builds acid from
6542417306maltose+carbon source
6542428053melibiose+carbon source
6542437657methyl D-glucoside+carbon source
6542451850methyl pyruvate-carbon source
6542417268myo-inositol+carbon source
6542463154N-acetyl-beta-D-mannosamine+carbon source
6542428037N-acetylgalactosamine+carbon source
65424506227N-acetylglucosamine+carbon source
6542435418n-acetylneuraminate-carbon source
6542417632nitrate+reduction
6542417309pectin-carbon source
6542417272propionate+carbon source
6542426490quinate-carbon source
6542416634raffinose+carbon source
6542417814salicin+carbon source
6542417164stachyose+carbon source
6542428017starch-hydrolysis
6542417992sucrose-builds acid from
6542417992sucrose+carbon source
6542427082trehalose-builds acid from
6542427082trehalose+carbon source
6542432528turanose+carbon source
6542453424tween 20+hydrolysis
6542453423tween 40+carbon source
6542453423tween 40+hydrolysis
6542453425tween 60+hydrolysis
6542453426tween 80-hydrolysis
6542416199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6542435581indoleyes
6542415138sulfideno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
6542417234glucose-
6542415688acetoin-

enzymes

@refvalueactivityec
65424cytochrome oxidase+1.9.3.1
65424alkaline phosphatase+3.1.3.1
65424esterase (C 4)+
65424esterase Lipase (C 8)+
65424leucine arylamidase+3.4.11.1
65424cystine arylamidase+3.4.11.3
65424valine arylamidase+
65424alpha-chymotrypsin+3.4.21.1
65424lipase (C 14)+
65424trypsin+3.4.21.4
65424acid phosphatase+3.1.3.2
65424naphthol-AS-BI-phosphohydrolase+
65424alpha-galactosidase-3.2.1.22
65424beta-galactosidase-3.2.1.23
65424beta-glucuronidase-3.2.1.31
65424alpha-glucosidase-3.2.1.20
65424beta-glucosidase-3.2.1.21
65424N-acetyl-beta-glucosaminidase-3.2.1.52
65424alpha-mannosidase-3.2.1.24
65424alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
65424a saline-alkali soil of Jade Gate PassGansu ProvinceChinaCHNAsiasaline agar mediumper litre, 7.5 g casein peptone, 100 g NaCl, 10 g yeast extract, 1.5 ml MS mixture (0.05 g each of betaine, proline, glycine, D-sorbitol and glutamate, added to 1000 ml H 2 O), 20 g agar (adjusted to pH 8.0 with HCl/NaOH)3 days37
67771From saline-alkali soil of Jade Gate PassGansu ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Alkaline
#Condition#Saline

Sequence information

16S sequences

  • @ref: 65424
  • description: 16S rRNA gene sequence
  • accession: KX008965
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Planococcus salinus LCB217GCA_003719725contigncbi1848460
66792Planococcus salinus LCB2172843378535draftimg1848460

GC content

@refGC-contentmethod
6542449.4thermal denaturation, midpoint method (Tm)
6777149.4

External links

@ref: 65424

culture collection no.: CGMCC 1.15685, KCTC 33861

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29300160Planococcus salinus sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.Gan L, Zhang H, Tian J, Li X, Long X, Zhang Y, Dai Y, Tian YInt J Syst Evol Microbiol10.1099/ijsem.0.0025482018Alkalies, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Planococcus Bacteria/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31287396Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site.Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi SInt J Syst Evol Microbiol10.1099/ijsem.0.0035412019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Explosive Agents, Fatty Acids/chemistry, India, Peptidoglycan/chemistry, Phosphatidylethanolamines, *Phylogeny, Pigmentation, Planococcaceae/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Pollutants, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65424Longzhan Gan, Heming Zhang, Jiewei Tian, Xiaoguang Li, Xiufeng Long, Yuqin Zhang, Yumei Dai, Yongqiang TianPlanococcus salinus sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil10.1099/ijsem.0.002548IJSEM 68: 589-595 201829300160
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc