Strain identifier

BacDive ID: 158684

Type strain: Yes

Species: Chryseobacterium salipaludis

Strain Designation: JC490

Strain history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ.

NCBI tax ID(s): 1961642 (species)

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General

@ref: 65420

BacDive-ID: 158684

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium salipaludis JC490 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from sediment of a salt marsh at a wild ass sanctuary at Dhrangadhra, Little Rann of Kutch.

NCBI tax id

  • NCBI tax id: 1961642
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch. Sasikala, Jawaharlal Nehru Technological Univ.

doi: 10.13145/bacdive158684.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium salipaludis
  • full scientific name: Chryseobacterium salipaludis Divyasree et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Planobacterium salipaludis

@ref: 65420

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium salipaludis

strain designation: JC490

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
65420negative1.0-2.0 µm0.2-0.4 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 65420
  • production: yes
  • name: flexirubin-type pigments

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
65420positivegrowth15-50
65420positiveoptimum35mesophilic
67771positivegrowth34mesophilic

culture pH

@refabilitytypepH
65420positivegrowth6-7
65420positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65420aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
65420NaClpositivegrowth0-4 %
65420NaClpositiveoptimum1 %

observation

@refobservation
65420MK-6 is the only quinone
65420has phosphatidylethanolamine, two unidentified aminolipids (AL1,2), two unidentified phospholipids (PL1,2,3) and five unidentified lipids (L1,2,3,4,5)
67771quinones: MK-6

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
65420casein-hydrolysis
65420cellobiose+assimilation17057
65420ribitol-assimilation15963
65420D-fructose+assimilation15824
65420D-galactose-assimilation12936
65420D-glucose+assimilation17634
65420D-mannose-assimilation16024
65420D-ribose-assimilation16988
65420D-sorbitol+assimilation17924
65420dna-hydrolysis16991
65420galactitol-assimilation16813
65420esculin-hydrolysis4853
65420ethanol-assimilation16236
65420gelatin+hydrolysis5291
65420glucose-builds acid from17234
65420glycerol-assimilation17754
65420myo-inositol+assimilation17268
65420isocitrate+assimilation16087
65420L-rhamnose-assimilation62345
65420lactose+assimilation17716
65420maltose hydrate+assimilation
65420mannitol-assimilation29864
65420methyl pyruvate+assimilation51850
65420nitrate-reduction17632
65420raffinose+assimilation16634
65420salicin+assimilation17814
65420starch-assimilation28017
65420starch-hydrolysis28017
65420sucrose-builds acid from17992
65420sucrose+assimilation17992
65420trehalose+assimilation27082
65420tween 20-hydrolysis53424
65420urea-hydrolysis16199
65420xylose+assimilation18222

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.group ID
65420100246norfloxacinyesyes10 µg (disc)
6542017833gentamicinyesyes10 µg (disc)
6542028864tobramycinyesyes10 µg (disc)
6542028971ampicillinyesyes10 µg (disc)
654203498cefotaxime sodiumyesyes30 µg (disc)
6542050845doxycyclineyesyes30 µg (disc)
65420478164cefepimeyesyes30 µg (disc)
654202637amikacinyesyes30 µg (disc)
6542029007ceftriaxoneyesyes30 µg (disc)
6542071415nitrofurantoinyesyes300 µg (disc)
6542017833gentamicinyesyes10 µg
654202676amoxicillinyesyes30 µg11
6542048947clavulanic acidyesyes30 µg11

metabolite production

@refChebi-IDmetaboliteproduction
6542035581indoleno
6542015138sulfideyes

enzymes

@refvalueactivityec
65420catalase+1.11.1.6
65420cytochrome oxidase+1.9.3.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65420C14:0 iso1
    65420C15:0 iso31.4
    65420C15:0 anteiso22.1
    65420C15:0 2OH1.2
    65420C15:0 iso 3OH2
    65420C16:01.2
    65420C16:0 iso5.6
    65420C16:0 iso 3OH2.4
    65420C17:0 2OH3.7
    65420C17:0 iso 3OH14
    65420C17:0 iso1.9
    65420C16:1ω7c and/or C16:1ω6c3
    65420iso-C 17:1ω9c and/or C16:0 10-methyl3.2
  • type of FA analysis: whole cell analysis
  • incubation medium: nutrient broth
  • library/peak naming table: RTSBA6
  • system: MIS MIDI
  • instrument: Agilent: 6850 series II gas chromatograph
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
65420sediment of a salt marsh at a wild ass sanctuary at Dhrangadhra, Little Rann of KutchGujaratIndiaINDAsia
67771From sediment sample of a salt marshWild Ass Sanctuary, Dhrangadhra, Little Rann of Kutch, GujaratIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Salt marsh
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 65420
  • description: 16S rRNA gene sequence
  • accession: LT795113
  • database: nuccore

GC content

@refGC-contentmethod
6542034high performance liquid chromatography (HPLC)
6777134.0

External links

@ref: 65420

culture collection no.: KCTC 52835, LMG 30048

literature

  • topic: Phylogeny
  • Pubmed-ID: 29256852
  • title: Chryseobacterium salipaludis sp. nov., isolated at a wild ass sanctuary.
  • authors: Divyasree B, Suresh G, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002536
  • year: 2017
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, *Equidae, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65420B. Divyasree, G. Suresh, Ch. Sasikala, Ch. V. RamanaChryseobacterium salipaludis sp. nov., isolated at a wild ass sanctuary10.1099/ijsem.0.002536IJSEM 68: 542-546 201829256852
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc