Strain identifier

BacDive ID: 158676

Type strain: Yes

Species: Marinomonas algicida

Strain Designation: Yeongu 1-4

NCBI tax ID(s): 1711926 (species)

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General

@ref: 65408

BacDive-ID: 158676

keywords: Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Marinomonas algicida Yeongu 1-4 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1711926
  • Matching level: species

doi: 10.13145/bacdive158676.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas algicida
  • full scientific name: Marinomonas algicida Kristyanto et al. 2017

@ref: 65408

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas algicida

strain designation: Yeongu 1-4

type strain: yes

Morphology

cell morphology

  • @ref: 65408
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

  • @ref: 65408
  • colony size: 1 mm
  • colony color: dull white
  • colony shape: circular
  • incubation period: 1 day
  • medium used: marine agar

Culture and growth conditions

culture medium

  • @ref: 65408
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65408positivegrowth4-42
65408nogrowth30mesophilic

culture pH

@refabilitytypepHPH range
65408positivegrowth4.5-9.0alkaliphile
65408positiveoptimum5.5-6.0

Physiology and metabolism

oxygen tolerance

  • @ref: 65408
  • oxygen tolerance: aerobe

spore formation

  • @ref: 65408
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65408NaClpositivegrowth1.0 %(w/v)
65408NaClpositiveoptimum1.0 %(w/v)

observation

@refobservation
65408no growth occurs on R2A agar
65408predominant respiratory quinone is Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6540817128adipate-assimilation
6540827613amygdalin-assimilation
6540822599arabinose+assimilation
6540827689decanoate-assimilation
65408casein-hydrolysis
6540817634D-glucose+assimilation
6540816899D-mannitol-assimilation
6540816024D-mannose+assimilation
6540825115malate+assimilation
65408esculin ferric citrate+hydrolysis
654085291gelatin-hydrolysis
6540817234glucose-assimilation
6540816087isocitrate+assimilation
6540830849L-arabinose+assimilation
6540817306maltose+assimilation
6540829864mannitol-assimilation
6540828053melibiose+assimilation
6540817268myo-inositol-assimilation
65408506227N-acetylglucosamine-assimilation
6540818401phenylacetate+assimilation
6540832032potassium gluconate-assimilation
6540826546rhamnose-assimilation
6540863005sodium nitrate+reduction
6540830911sorbitol-assimilation
6540828017starch-hydrolysis
6540817992sucrose+assimilation
6540853426tween 80-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
6540817833gentamicinyesyes10 µg (disc)
6540817076streptomycinyesyes10 µg (disc)
6540828077rifampicinyesyes10 µg (disc)
654086104kanamycinyesyes30 µg (disc)
6540845924trimethoprimyesyes30 µg (disc)
654087507neomycinyesyes30 µg (disc)
6540827902tetracyclineyesyes30 µg (disc)
6540817334penicillinyesyes10 µg (disc)
6540828971ampicillinyesyes30 µg (disc)
65408100147nalidixic acidyesyes30 µg (disc)
6540827641cycloheximideyesyes30 µg (disc)
654089332sulfamethoxazoleyesyes30 µg (disc)
6540828368novobiocinyesyes30 µg (disc)
6540817698chloramphenicolyesyes100 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6540835581indoleno
6540815138sulfideno

enzymes

@refvalueactivityec
65408cytochrome oxidase-1.9.3.1
65408catalase+1.11.1.6
65408DNase+
65408urease+3.5.1.5
65408lysine decarboxylase-4.1.1.18
65408arginine dihydrolase-3.5.3.6
65408ornithine decarboxylase-4.1.1.17
65408alkaline phosphatase+3.1.3.1
65408esterase (C 4)+
65408esterase Lipase (C 8)+
65408leucine arylamidase+3.4.11.1
65408valine arylamidase+
65408cystine arylamidase+3.4.11.3
65408alpha-chymotrypsin+3.4.21.1
65408acid phosphatase+3.1.3.2
65408naphthol-AS-BI-phosphohydrolase+
65408alpha-galactosidase+3.2.1.22
65408beta-galactosidase+3.2.1.23
65408alpha-glucosidase+3.2.1.20
65408beta-glucosidase+3.2.1.21
65408lipase (C 14)-
65408trypsin-3.4.21.4
65408beta-glucuronidase-3.2.1.31
65408N-acetyl-beta-glucosaminidase-3.2.1.52
65408alpha-mannosidase-3.2.1.24
65408alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65408C12:05.2
    65408C14:02.2
    65408C16:022.1
    65408C18:01.2
    65408C18:1ω7c27.3
    65408C17:0 cyclo0.7
    65408C19:0cycloω8c1.8
    65408C10:0 3OH2.3
    65408C12:0 2OH1.6
    65408C12:0 3OH4.1
    65408C16:1ω7c and/or C16:1ω6c30.5
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar
  • incubation temperature: 25
  • incubation time: 1
  • software version: Sherlock 6.2B
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • instrument: HP 6890 series GC system; Hewlett Packard
  • method/protocol: Sasser, 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

  • @ref: 65408
  • sample type: surface seawater
  • geographic location: Geoje Island in the South Sea
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

Sequence information

GC content

  • @ref: 65408
  • GC-content: 44.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 65408

culture collection no.: KEMB 9005-327, MCCC 1K00609

literature

  • topic: Phylogeny
  • Pubmed-ID: 28984571
  • title: Characterization of Marinomonas algicida sp. nov., a novel algicidal marine bacterium isolated from seawater.
  • authors: Kristyanto S, Chaudhary DK, Lee SS, Kim J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002374
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinomonas/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65408Sylvia Kristyanto, Dhiraj Kumar Chaudhary, Sang-Seob Lee, Jaisoo KimCharacterization of Marinomonas algicida sp. nov., a novel algicidal marine bacterium isolated from seawater10.1099/ijsem.0.002374IJSEM 67: 4777-4784 201728984571