Strain identifier

BacDive ID: 158636

Type strain: Yes

Species: Aquimarina algiphila

Strain Designation: 9Alg 151

Strain history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia

NCBI tax ID(s): 2047982 (species)

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General

@ref: 65361

BacDive-ID: 158636

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Aquimarina algiphila 9Alg 151 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from red alga Tichocarpus crinitus.

NCBI tax id

  • NCBI tax id: 2047982
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia

doi: 10.13145/bacdive158636.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina algiphila
  • full scientific name: Aquimarina algiphila Nedashkovskaya et al. 2018

@ref: 65361

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina algiphila

strain designation: 9Alg 151

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
65361negative1.7-4.5 µm0.3-0.5 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative

colony morphology

  • @ref: 65361
  • colony size: 1-2 mm
  • colony color: yellow-orange
  • colony shape: circular
  • medium used: marine agar 2216

pigmentation

  • @ref: 65361
  • production: no
  • name: flexirubin-type pigments

Culture and growth conditions

culture medium

  • @ref: 65361
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65361positivegrowth5-34
65361positiveoptimum25-28mesophilic
67771positivegrowth25-28mesophilic

culture pH

@refabilitytypepHPH range
65361positivegrowth6-9.5alkaliphile
65361positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65361aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
65361NaClpositivegrowth0.5-5 %
65361NaClpositiveoptimum2-4 %

observation

@refobservation
65361NaCl alone does not support growth, seawater or artificial seawater are required for strain cultivation.
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
653612509agar+hydrolysis
6536127613amygdalin+assimilation
6536185146carboxymethylcellulose-hydrolysis
65361casein-hydrolysis
6536117057cellobiose-builds acid from
6536117029chitin+hydrolysis
6536116947citrate-builds acid from
6536116947citrate+assimilation
6536115824D-fructose-builds acid from
6536112936D-galactose-builds acid from
6536117634D-glucose+assimilation
6536117634D-glucose+builds acid from
6536116024D-mannose-builds acid from
6536116024D-mannose+assimilation
6536165327D-xylose-builds acid from
6536116991dna+hydrolysis
653614853esculin+hydrolysis
653614853esculin+oxidation
653615291gelatin+hydrolysis
6536117754glycerol-builds acid from
6536117268myo-inositol-builds acid from
6536130849L-arabinose-builds acid from
6536162345L-rhamnose-builds acid from
6536117716lactose-builds acid from
6536117716lactose+assimilation
6536117306maltose-builds acid from
6536129864mannitol-builds acid from
6536128053melibiose-builds acid from
65361506227N-acetylglucosamine-builds acid from
6536117632nitrate+reduction
6536116634raffinose-builds acid from
6536133942ribose-builds acid from
6536130911sorbitol-builds acid from
6536128017starch+hydrolysis
6536117992sucrose-builds acid from
6536117992sucrose+assimilation
6536127082trehalose-builds acid from
6536153424tween 20-hydrolysis
6536153423tween 40+hydrolysis
6536153426tween 80+hydrolysis
6536116199urea-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
653617731ofloxacinyesyes5 µg (disc)
6536128077rifampicinyesyes5 µg (disc)
6536148923erythromycinyesyes15 µg (disc)
653616472lincomycinyesyes15 µg (disc)
653613534cephalexinyesyes30 µg (disc)
6536117698chloramphenicolyesyes30 µg (disc)
65361100147nalidixic acidyesyes30 µg (disc)
6536128001vancomycinyesyes30 µg (disc)
653613393carbenicillinyesyes100 µg (disc)
6536127902tetracyclineyesyes5 µg (disc)
6536128971ampicillinyesyes10 µg (disc)
6536150845doxycyclineyesyes10 µg (disc)
6536117833gentamicinyesyes10 µg (disc)
6536149566cloxacillinyesyes10 µg (disc)
6536118208penicillin gyesyes10 Unit (disc)
6536116869oleandomycinyesyes15 µg (disc)
65361474053cefazolinyesyes30 µg (disc)
653616104kanamycinyesyes30 µg (disc)
653617507neomycinyesyes30 µg (disc)
6536117076streptomycinyesyes30 µg (disc)
653618309polymyxin byesyes300 Unit (disc)

metabolite production

@refChebi-IDmetaboliteproduction
6536115688acetoinno
6536116136hydrogen sulfideno
6536135581indoleno

enzymes

@refvalueactivityec
65361alkaline phosphatase+3.1.3.1
65361esterase (C 4)+
65361esterase Lipase (C 8)+
65361leucine arylamidase+3.4.11.1
65361cystine arylamidase+3.4.11.3
65361valine arylamidase+
65361trypsin+3.4.21.4
65361alpha-chymotrypsin+3.4.21.1
65361acid phosphatase+3.1.3.2
65361naphthol-AS-BI-phosphohydrolase+
65361alpha-glucosidase+3.2.1.20
65361lipase (C 14)-
65361alpha-galactosidase-3.2.1.22
65361beta-galactosidase-3.2.1.23
65361beta-glucuronidase-3.2.1.31
65361beta-glucosidase-3.2.1.21
65361N-acetyl-beta-glucosaminidase-3.2.1.52
65361alpha-mannosidase-3.2.1.24
65361alpha-fucosidase-3.2.1.51
65361arginine dihydrolase-3.5.3.6
65361lysine decarboxylase-4.1.1.18
65361ornithine decarboxylase-4.1.1.17
65361tryptophan deaminase-4.1.99.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture temperature
65361red alga Tichocarpus crinitusTroitsa Bay, Gulf of Peter the Great, Sea of Japan (also is known as the East Sea), Pacific OceanRussiaRUSAsia42.6225131.135marine agar 221628
67771From the red algae 'Tichocarpus crinitus`Troitsa Bay, Gulf of Peter the Great, Donghae(Sea of Japan), Pacific OceanRussiaRUSAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Red algae

Sequence information

16S sequences

  • @ref: 65361
  • description: 16S rRNA gene sequence
  • accession: MG232646
  • database: nuccore

GC content

@refGC-contentmethod
6536132.6thermal denaturation, midpoint method (Tm)
6777132.6

External links

@ref: 65361

culture collection no.: KCTC 23622, KMM 6462

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458485
  • title: Aquimarina algiphila sp. nov., a chitin degrading bacterium isolated from the red alga Tichocarpus crinitus.
  • authors: Nedashkovskaya OI, Kim SG, Stenkova AM, Kukhlevskiy AD, Zhukova NV, Mikhailov VV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002606
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Russia, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65361Olga I. Nedashkovskaya, Song-Gun Kim, Anna M. Stenkova, Andrey D. Kukhlevskiy, Natalia V. Zhukova, Valery V. MikhailovAquimarina algiphila sp. nov., a chitin degrading bacterium isolated from the red alga Tichocarpus crinitus10.1099/ijsem.0.002606IJSEM 68: 892-898 201829458485
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc