Strain identifier
BacDive ID: 158623
Type strain:
Species: Arenibacter catalasegens
Strain Designation: P308H10
Strain history: <- Anzhang Li, Guangdong Institute of Microbiology
NCBI tax ID(s): 2056779 (species)
General
@ref: 65348
BacDive-ID: 158623
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming
description: Arenibacter catalasegens P308H10 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface sediment .
NCBI tax id
- NCBI tax id: 2056779
- Matching level: species
strain history
- @ref: 67771
- history: <- Anzhang Li, Guangdong Institute of Microbiology
doi: 10.13145/bacdive158623.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Arenibacter
- species: Arenibacter catalasegens
- full scientific name: Arenibacter catalasegens Li et al. 2018
@ref: 65348
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Arenibacter
species: Arenibacter catalasegens
strain designation: P308H10
type strain: yes
Morphology
cell morphology
- @ref: 65348
- gram stain: negative
- cell length: 1.5-3 µm
- cell width: 0.4-0.6 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 65348
- colony size: 1 mm
- colony color: yellow
- colony shape: circular
- incubation period: 5-7 days
- medium used: marine agar 2216
pigmentation
- @ref: 65348
- production: no
- name: flexirubin-type pigments
Culture and growth conditions
culture medium
- @ref: 65348
- name: Marine agar (MA)
- growth: yes
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65348 | positive | growth | 4-36 | |
65348 | positive | optimum | 20-25 | |
67771 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
65348 | positive | growth | 6-8.5 | alkaliphile |
65348 | positive | optimum | 7.5-8 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
65348 | aerobe |
67771 | aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
65348 | NaCl | positive | growth | 1-8 %(w/v) |
65348 | NaCl | positive | optimum | 2-3 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
65348 | 16651 | (S)-lactate | + | carbon source |
65348 | 1 % sodium lactate | + | carbon source | |
65348 | 16763 | 2-oxobutanoate | + | carbon source |
65348 | 30916 | 2-oxoglutarate | + | carbon source |
65348 | 37054 | 3-hydroxybutyrate | - | carbon source |
65348 | 73918 | 3-O-methyl-D-glucose | - | carbon source |
65348 | 18101 | 4-hydroxyphenylacetic acid | - | carbon source |
65348 | 30089 | acetate | + | carbon source |
65348 | 13705 | acetoacetate | - | carbon source |
65348 | 17128 | adipate | - | assimilation |
65348 | 17925 | alpha-D-glucose | + | carbon source |
65348 | 36219 | alpha-lactose | + | carbon source |
65348 | 64552 | 2-hydroxybutyrate | - | carbon source |
65348 | 27613 | amygdalin | - | builds acid from |
65348 | 22599 | arabinose | - | builds acid from |
65348 | 161680 | aztreonam | + | carbon source |
65348 | 73706 | bromosuccinate | + | carbon source |
65348 | 27689 | decanoate | - | assimilation |
65348 | casein | - | hydrolysis | |
65348 | 62968 | cellulose | - | hydrolysis |
65348 | 16947 | citrate | - | carbon source |
65348 | 18333 | D-arabitol | + | carbon source |
65348 | 29990 | D-aspartate | - | carbon source |
65348 | 17057 | cellobiose | + | carbon source |
65348 | 15824 | D-fructose | + | carbon source |
65348 | 78697 | D-fructose 6-phosphate | + | carbon source |
65348 | 28847 | D-fucose | + | carbon source |
65348 | 12936 | D-galactose | + | carbon source |
65348 | 18024 | D-galacturonic acid | + | carbon source |
65348 | 17634 | D-glucose | + | assimilation |
65348 | 14314 | D-glucose 6-phosphate | + | carbon source |
65348 | 15748 | D-glucuronate | + | carbon source |
65348 | 15588 | D-malate | + | carbon source |
65348 | 17306 | maltose | + | carbon source |
65348 | 16899 | D-mannitol | + | assimilation |
65348 | 16899 | D-mannitol | + | carbon source |
65348 | 16024 | D-mannose | - | assimilation |
65348 | 16024 | D-mannose | + | carbon source |
65348 | 28053 | melibiose | + | carbon source |
65348 | 16634 | raffinose | + | carbon source |
65348 | 33801 | D-saccharate | - | carbon source |
65348 | 16523 | D-serine | - | carbon source |
65348 | 16523 | D-serine | + | carbon source |
65348 | 17924 | D-sorbitol | + | carbon source |
65348 | 16551 | D-trehalose | + | carbon source |
65348 | 32528 | turanose | + | carbon source |
65348 | 23652 | dextrin | + | carbon source |
65348 | 4853 | esculin | + | hydrolysis |
65348 | 15740 | formate | - | carbon source |
65348 | 71321 | fusidate | + | carbon source |
65348 | 16537 | galactarate | - | carbon source |
65348 | 16865 | gamma-aminobutyric acid | - | carbon source |
65348 | 5291 | gelatin | - | hydrolysis |
65348 | 5291 | gelatin | + | carbon source |
65348 | 28066 | gentiobiose | + | carbon source |
65348 | 17234 | glucose | - | builds acid from |
65348 | 32323 | glucuronamide | + | carbon source |
65348 | 17754 | glycerol | + | carbon source |
65348 | 70744 | glycine-proline | + | carbon source |
65348 | 17596 | inosine | - | carbon source |
65348 | 17268 | myo-inositol | - | builds acid from |
65348 | 16977 | L-alanine | + | carbon source |
65348 | 30849 | L-arabinose | - | assimilation |
65348 | 16467 | L-arginine | + | carbon source |
65348 | 29991 | L-aspartate | + | carbon source |
65348 | 18287 | L-fucose | + | carbon source |
65348 | 17464 | L-galactonic acid gamma-lactone | + | carbon source |
65348 | 29985 | L-glutamate | + | carbon source |
65348 | 15971 | L-histidine | + | carbon source |
65348 | 15589 | L-malate | + | carbon source |
65348 | 18183 | L-pyroglutamic acid | - | carbon source |
65348 | 62345 | L-rhamnose | + | carbon source |
65348 | 17115 | L-serine | - | carbon source |
65348 | 17895 | L-tyrosine | - | hydrolysis |
65348 | 48607 | lithium chloride | + | carbon source |
65348 | 25115 | malate | - | assimilation |
65348 | 17306 | maltose | - | assimilation |
65348 | 29864 | mannitol | - | builds acid from |
65348 | 28053 | melibiose | - | builds acid from |
65348 | 74611 | methyl (R)-lactate | + | carbon source |
65348 | 320055 | methyl beta-D-glucopyranoside | + | carbon source |
65348 | 51850 | methyl pyruvate | - | carbon source |
65348 | 17268 | myo-inositol | + | carbon source |
65348 | 63153 | N-acetyl-D-mannosamine | + | carbon source |
65348 | 28037 | N-acetylgalactosamine | + | carbon source |
65348 | 506227 | N-acetylglucosamine | - | assimilation |
65348 | 506227 | N-acetylglucosamine | + | carbon source |
65348 | 35418 | n-acetylneuraminate | + | carbon source |
65348 | 100147 | nalidixic acid | + | carbon source |
65348 | 17632 | nitrate | - | reduction |
65348 | 17309 | pectin | - | carbon source |
65348 | 18401 | phenylacetate | - | assimilation |
65348 | 32032 | potassium gluconate | - | assimilation |
65348 | 75248 | potassium tellurite | + | carbon source |
65348 | 17272 | propionate | - | carbon source |
65348 | 26490 | quinate | + | carbon source |
65348 | 26546 | rhamnose | - | builds acid from |
65348 | 17814 | salicin | + | carbon source |
65348 | 75229 | sodium bromate | + | carbon source |
65348 | 64103 | sodium butyrate | + | carbon source |
65348 | 53258 | sodium citrate | - | assimilation |
65348 | 30911 | sorbitol | - | builds acid from |
65348 | 17164 | stachyose | + | carbon source |
65348 | 28017 | starch | - | hydrolysis |
65348 | 17992 | sucrose | - | builds acid from |
65348 | 17992 | sucrose | + | carbon source |
65348 | 53424 | tween 20 | - | hydrolysis |
65348 | 53423 | tween 40 | + | carbon source |
65348 | 53426 | tween 80 | - | hydrolysis |
65348 | 37166 | xylan | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
65348 | 15688 | acetoin | yes |
65348 | 16136 | hydrogen sulfide | no |
65348 | 35581 | indole | no |
metabolite tests
- @ref: 65348
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
65348 | cytochrome oxidase | + | 1.9.3.1 |
65348 | alkaline phosphatase | + | 3.1.3.1 |
65348 | esterase (C 4) | + | |
65348 | leucine arylamidase | + | 3.4.11.1 |
65348 | valine arylamidase | + | |
65348 | cystine arylamidase | + | 3.4.11.3 |
65348 | acid phosphatase | + | 3.1.3.2 |
65348 | naphthol-AS-BI-phosphohydrolase | + | |
65348 | alpha-galactosidase | + | 3.2.1.22 |
65348 | beta-glucosidase | + | 3.2.1.21 |
65348 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
65348 | alpha-mannosidase | + | 3.2.1.24 |
65348 | esterase Lipase (C 8) | + | |
65348 | lipase (C 14) | + | |
65348 | trypsin | + | 3.4.21.4 |
65348 | catalase | - | 1.11.1.6 |
65348 | beta-galactosidase | - | 3.2.1.23 |
65348 | alpha-chymotrypsin | - | 3.4.21.1 |
65348 | beta-glucuronidase | - | 3.2.1.31 |
65348 | alpha-glucosidase | - | 3.2.1.20 |
65348 | alpha-fucosidase | - | 3.2.1.51 |
65348 | arginine dihydrolase | - | 3.5.3.6 |
65348 | lysine decarboxylase | - | 4.1.1.18 |
65348 | ornithine decarboxylase | - | 4.1.1.17 |
65348 | urease | - | 3.5.1.5 |
65348 | gelatinase | - | |
65348 | tryptophan deaminase | - | 4.1.99.1 |
fatty acid profile
fatty acids
@ref fatty acid percentage 65348 C14:0 0.7 65348 C16:0 1.4 65348 C15:0 iso 10.1 65348 C15:0 anteiso 1.8 65348 C12:1 0.8 65348 C13:1 0.7 65348 C15:1ω6c 6.4 65348 C17:1ω6c 4.8 65348 C17:1ω8c 1.6 65348 C18:1ω5c 0.5 65348 iso-C14:1 E 0.7 65348 C15:1 iso G 13.4 65348 C16:0 3OH 1.7 65348 C15:0 iso 3OH 7.5 65348 C16:0 iso 3OH 1.3 65348 C17:0 iso 3OH 15.1 65348 C16:1ω6c and/or C16:1ω7c 17.3 65348 C17:1 iso I and/or C17:1 anteiso B 3.2 65348 iso-C17:1ω9c and/or 10-methyl C16:0 7.3 - type of FA analysis: whole cell analysis
- incubation medium: marine agar 2216
- agar/liquid: agar
- incubation temperature: 25
- software version: Sherlock 6.1
- library/peak naming table: TSBA6.1
- system: MIS MIDI
- cutoff value:
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent | latitude | longitude | enrichment culture | enrichment culture duration | enrichment culture temperature | isolation procedure |
---|---|---|---|---|---|---|---|---|---|---|---|---|
65348 | surface sediment (depth 164m) | 2013-01 | Southern Indian Ocean, near Cape Darnley | Antarctica | ATA | Australia and Oceania | -67.25 | -68 | marine agar 2216 | 7 days | 25 | Two grams sediment was resuspended in 20 ml sterile seawater. The suspension was serially diluted and plated on marine agar 2216. After incubating for 7 days at 25°C, bacterial strains were isolated and purified by repeated streaking. |
67771 | From marine sediment | Ross sea, Antarctica | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Sediment |
#Environmental | #Aquatic | #Surface water |
Sequence information
16S sequences
- @ref: 65348
- description: 16S rRNA gene sequence
- accession: MG183691
- database: nuccore
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Arenibacter catalasegens P308H10 | GCA_002909235 | contig | ncbi | 2056779 |
66792 | Arenibacter catalasegens P308H10 | 2791354975 | draft | img | 2056779 |
GC content
- @ref: 65348
- GC-content: 38.2
- method: genome sequence analysis
External links
@ref: 65348
culture collection no.: GDMCC 1.1230, KCTC 52983
literature
- topic: Phylogeny
- Pubmed-ID: 29458460
- title: Arenibacter catalasegens sp. nov., isolated from marine surface sediment, and emended description of the genus Arenibacter.
- authors: Li AZ, Lin LZ, Zhang MX, Lv Y, Zhu HH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002576
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Indian Ocean, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
65348 | An-Zhang Li, Long-Zhen Lin, Ming-Xia Zhang, Yingying Lv, Hong-Hui Zhu | Arenibacter catalasegens sp. nov., isolated from marine surface sediment, and emended description of the genus Arenibacter | 10.1099/ijsem.0.002576 | IJSEM 68: 758-763 2018 | 29458460 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |