Strain identifier

BacDive ID: 158623

Type strain: Yes

Species: Arenibacter catalasegens

Strain Designation: P308H10

Strain history: <- Anzhang Li, Guangdong Institute of Microbiology

NCBI tax ID(s): 2056779 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65348

BacDive-ID: 158623

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Arenibacter catalasegens P308H10 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface sediment .

NCBI tax id

  • NCBI tax id: 2056779
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Anzhang Li, Guangdong Institute of Microbiology

doi: 10.13145/bacdive158623.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Arenibacter
  • species: Arenibacter catalasegens
  • full scientific name: Arenibacter catalasegens Li et al. 2018

@ref: 65348

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Arenibacter

species: Arenibacter catalasegens

strain designation: P308H10

type strain: yes

Morphology

cell morphology

  • @ref: 65348
  • gram stain: negative
  • cell length: 1.5-3 µm
  • cell width: 0.4-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65348
  • colony size: 1 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 5-7 days
  • medium used: marine agar 2216

pigmentation

  • @ref: 65348
  • production: no
  • name: flexirubin-type pigments

Culture and growth conditions

culture medium

  • @ref: 65348
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65348positivegrowth4-36
65348positiveoptimum20-25
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
65348positivegrowth6-8.5alkaliphile
65348positiveoptimum7.5-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65348aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
65348NaClpositivegrowth1-8 %(w/v)
65348NaClpositiveoptimum2-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6534816651(S)-lactate+carbon source
653481 % sodium lactate+carbon source
65348167632-oxobutanoate+carbon source
65348309162-oxoglutarate+carbon source
65348370543-hydroxybutyrate-carbon source
65348739183-O-methyl-D-glucose-carbon source
65348181014-hydroxyphenylacetic acid-carbon source
6534830089acetate+carbon source
6534813705acetoacetate-carbon source
6534817128adipate-assimilation
6534817925alpha-D-glucose+carbon source
6534836219alpha-lactose+carbon source
65348645522-hydroxybutyrate-carbon source
6534827613amygdalin-builds acid from
6534822599arabinose-builds acid from
65348161680aztreonam+carbon source
6534873706bromosuccinate+carbon source
6534827689decanoate-assimilation
65348casein-hydrolysis
6534862968cellulose-hydrolysis
6534816947citrate-carbon source
6534818333D-arabitol+carbon source
6534829990D-aspartate-carbon source
6534817057cellobiose+carbon source
6534815824D-fructose+carbon source
6534878697D-fructose 6-phosphate+carbon source
6534828847D-fucose+carbon source
6534812936D-galactose+carbon source
6534818024D-galacturonic acid+carbon source
6534817634D-glucose+assimilation
6534814314D-glucose 6-phosphate+carbon source
6534815748D-glucuronate+carbon source
6534815588D-malate+carbon source
6534817306maltose+carbon source
6534816899D-mannitol+assimilation
6534816899D-mannitol+carbon source
6534816024D-mannose-assimilation
6534816024D-mannose+carbon source
6534828053melibiose+carbon source
6534816634raffinose+carbon source
6534833801D-saccharate-carbon source
6534816523D-serine-carbon source
6534816523D-serine+carbon source
6534817924D-sorbitol+carbon source
6534816551D-trehalose+carbon source
6534832528turanose+carbon source
6534823652dextrin+carbon source
653484853esculin+hydrolysis
6534815740formate-carbon source
6534871321fusidate+carbon source
6534816537galactarate-carbon source
6534816865gamma-aminobutyric acid-carbon source
653485291gelatin-hydrolysis
653485291gelatin+carbon source
6534828066gentiobiose+carbon source
6534817234glucose-builds acid from
6534832323glucuronamide+carbon source
6534817754glycerol+carbon source
6534870744glycine-proline+carbon source
6534817596inosine-carbon source
6534817268myo-inositol-builds acid from
6534816977L-alanine+carbon source
6534830849L-arabinose-assimilation
6534816467L-arginine+carbon source
6534829991L-aspartate+carbon source
6534818287L-fucose+carbon source
6534817464L-galactonic acid gamma-lactone+carbon source
6534829985L-glutamate+carbon source
6534815971L-histidine+carbon source
6534815589L-malate+carbon source
6534818183L-pyroglutamic acid-carbon source
6534862345L-rhamnose+carbon source
6534817115L-serine-carbon source
6534817895L-tyrosine-hydrolysis
6534848607lithium chloride+carbon source
6534825115malate-assimilation
6534817306maltose-assimilation
6534829864mannitol-builds acid from
6534828053melibiose-builds acid from
6534874611methyl (R)-lactate+carbon source
65348320055methyl beta-D-glucopyranoside+carbon source
6534851850methyl pyruvate-carbon source
6534817268myo-inositol+carbon source
6534863153N-acetyl-D-mannosamine+carbon source
6534828037N-acetylgalactosamine+carbon source
65348506227N-acetylglucosamine-assimilation
65348506227N-acetylglucosamine+carbon source
6534835418n-acetylneuraminate+carbon source
65348100147nalidixic acid+carbon source
6534817632nitrate-reduction
6534817309pectin-carbon source
6534818401phenylacetate-assimilation
6534832032potassium gluconate-assimilation
6534875248potassium tellurite+carbon source
6534817272propionate-carbon source
6534826490quinate+carbon source
6534826546rhamnose-builds acid from
6534817814salicin+carbon source
6534875229sodium bromate+carbon source
6534864103sodium butyrate+carbon source
6534853258sodium citrate-assimilation
6534830911sorbitol-builds acid from
6534817164stachyose+carbon source
6534828017starch-hydrolysis
6534817992sucrose-builds acid from
6534817992sucrose+carbon source
6534853424tween 20-hydrolysis
6534853423tween 40+carbon source
6534853426tween 80-hydrolysis
6534837166xylan-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6534815688acetoinyes
6534816136hydrogen sulfideno
6534835581indoleno

metabolite tests

  • @ref: 65348
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
65348cytochrome oxidase+1.9.3.1
65348alkaline phosphatase+3.1.3.1
65348esterase (C 4)+
65348leucine arylamidase+3.4.11.1
65348valine arylamidase+
65348cystine arylamidase+3.4.11.3
65348acid phosphatase+3.1.3.2
65348naphthol-AS-BI-phosphohydrolase+
65348alpha-galactosidase+3.2.1.22
65348beta-glucosidase+3.2.1.21
65348N-acetyl-beta-glucosaminidase+3.2.1.52
65348alpha-mannosidase+3.2.1.24
65348esterase Lipase (C 8)+
65348lipase (C 14)+
65348trypsin+3.4.21.4
65348catalase-1.11.1.6
65348beta-galactosidase-3.2.1.23
65348alpha-chymotrypsin-3.4.21.1
65348beta-glucuronidase-3.2.1.31
65348alpha-glucosidase-3.2.1.20
65348alpha-fucosidase-3.2.1.51
65348arginine dihydrolase-3.5.3.6
65348lysine decarboxylase-4.1.1.18
65348ornithine decarboxylase-4.1.1.17
65348urease-3.5.1.5
65348gelatinase-
65348tryptophan deaminase-4.1.99.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    65348C14:00.7
    65348C16:01.4
    65348C15:0 iso10.1
    65348C15:0 anteiso1.8
    65348C12:10.8
    65348C13:10.7
    65348C15:1ω6c6.4
    65348C17:1ω6c4.8
    65348C17:1ω8c1.6
    65348C18:1ω5c0.5
    65348iso-C14:1 E0.7
    65348C15:1 iso G13.4
    65348C16:0 3OH1.7
    65348C15:0 iso 3OH7.5
    65348C16:0 iso 3OH1.3
    65348C17:0 iso 3OH15.1
    65348C16:1ω6c and/or C16:1ω7c17.3
    65348C17:1 iso I and/or C17:1 anteiso B3.2
    65348iso-C17:1ω9c and/or 10-methyl C16:07.3
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 25
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6.1
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
65348surface sediment (depth 164m)2013-01Southern Indian Ocean, near Cape DarnleyAntarcticaATAAustralia and Oceania-67.25-68marine agar 22167 days25Two grams sediment was resuspended in 20 ml sterile seawater. The suspension was serially diluted and plated on marine agar 2216. After incubating for 7 days at 25°C, bacterial strains were isolated and purified by repeated streaking.
67771From marine sedimentRoss sea, AntarcticaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Surface water

Sequence information

16S sequences

  • @ref: 65348
  • description: 16S rRNA gene sequence
  • accession: MG183691
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arenibacter catalasegens P308H10GCA_002909235contigncbi2056779
66792Arenibacter catalasegens P308H102791354975draftimg2056779

GC content

  • @ref: 65348
  • GC-content: 38.2
  • method: genome sequence analysis

External links

@ref: 65348

culture collection no.: GDMCC 1.1230, KCTC 52983

literature

  • topic: Phylogeny
  • Pubmed-ID: 29458460
  • title: Arenibacter catalasegens sp. nov., isolated from marine surface sediment, and emended description of the genus Arenibacter.
  • authors: Li AZ, Lin LZ, Zhang MX, Lv Y, Zhu HH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002576
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Indian Ocean, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65348An-Zhang Li, Long-Zhen Lin, Ming-Xia Zhang, Yingying Lv, Hong-Hui ZhuArenibacter catalasegens sp. nov., isolated from marine surface sediment, and emended description of the genus Arenibacter10.1099/ijsem.0.002576IJSEM 68: 758-763 201829458460
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc