Strain identifier
BacDive ID: 158489
Type strain: 
Species: Lucifera butyrica
Strain Designation: ALE
Strain history: I. Sánchez-Andrea strain ALE.
NCBI tax ID(s): 1351585 (species)
version 9.3 (current version)
General
@ref: 65165
BacDive-ID: 158489
DSM-Number: 27520
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lucifera butyrica ALE is a mesophilic bacterium that was isolated from sediment from Tinto River.
NCBI tax id
- NCBI tax id: 1351585
- Matching level: species
strain history
| @ref | history |
|---|---|
| 65165 | <- I. Sánchez-Andrea, Lab. Microbiology, Wageningen Univ., Netherlands; ALE <- I. Sánchez-Andrea {2012} |
| 67770 | I. Sánchez-Andrea strain ALE. |
doi: 10.13145/bacdive158489.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Lucifera
- species: Lucifera butyrica
- full scientific name: Lucifera butyrica Sánchez-Andrea et al. 2019
@ref: 65165
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Lucifera
species: Lucifera butyrica
full scientific name: Lucifera butyrica Sánchez-Andrea et al. 2019
strain designation: ALE
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65165
- name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
- growth: yes
- link: https://mediadive.dsmz.de/medium/503
- composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Glucose 1.99402 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 65165 | positive | growth | 35 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 65165 | sediment from Tinto River | Huelva, Iberian Pyritic Belt | Spain | ESP | Europe |
| 67770 | Sediments of an acid rock drainage environment | Tinto River | Spain | ESP | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 65165 | Veillonellaceae bacterium ALE partial 16S rRNA gene, strain ALE, clone 3 | HG317004 | 1397 | nuccore | 1351585 |
| 67770 | Veillonellaceae bacterium ALE partial 16S rRNA gene, strain ALE, clone 4 | HG317005 | 1397 | nuccore | 1351585 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lucifera butyrica ALE | 2887343441 | draft | img | 1351585 |
| 67770 | Lucifera butyrica DSM 44889 | GCA_900476375 | contig | ncbi | 1351585 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 65165 | 47.0 | sequence analysis |
| 67770 | 46.96 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 88.7 |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 73.1 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 70.1 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 86 |
External links
@ref: 65165
culture collection no.: DSM 27520, JCM 19373
straininfo link
- @ref: 111284
- straininfo: 397043
literature
- topic: Phylogeny
- Pubmed-ID: 30631314
- title: Co-culture of a Novel Fermentative Bacterium, Lucifera butyrica gen. nov. sp. nov., With the Sulfur Reducer Desulfurella amilsii for Enhanced Sulfidogenesis.
- authors: Sanchez-Andrea I, Florentino AP, Semerel J, Strepis N, Sousa DZ, Stams AJM
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2018.03108
- year: 2018
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 65165 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27520 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27520) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 111284 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397043.1 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |