Strain identifier

BacDive ID: 158485

Type strain: Yes

Species: Jiangella rhizosphaerae

Strain Designation: NEAU-YY265

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-YY265.

NCBI tax ID(s): 2293569 (species)

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General

@ref: 65161

BacDive-ID: 158485

DSM-Number: 106774

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Jiangella rhizosphaerae NEAU-YY265 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 2293569
  • Matching level: species

strain history

@refhistory
65161<- J. Zhao, School of Life Science,Northeast Agricultural University; NEAU-YY265 <- Y. Zhao, School of Life Science, Northeast Agricultural University; NEAU-YY265
67770J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; NEAU-YY265.

doi: 10.13145/bacdive158485.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Jiangella
  • species: Jiangella rhizosphaerae
  • full scientific name: Jiangella rhizosphaerae Han et al. 2019

@ref: 65161

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jiangellaceae

genus: Jiangella

species: Jiangella rhizosphaerae

full scientific name: Jiangella rhizosphaerae Han et al. 2019

strain designation: NEAU-YY265

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
67867positive1.3-1.9 µm0.5-0.7 µmrod-shaped
69480no95.761
69480positive100

colony morphology

  • @ref: 67867
  • colony color: white to pale yellow

multicellular morphology

  • @ref: 67867
  • forms multicellular complex: yes
  • further description: forms mycelia that fragment into short or elongated rods and the surface is rough

multimedia

  • @ref: 65161
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_106774.jpg
  • caption: Medium 535 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 65161
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
65161positivegrowth28mesophilic
67770positivegrowth28mesophilic
67867positivegrowth20-45
67867positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
67867positivegrowth4-10alkaliphile
67867positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 67867
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 97

halophily

@refsaltgrowthtested relationconcentration
67867NaClpositivegrowth0-5 %(w/v)
67867NaClpositiveoptimum0-1 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H2)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
67867milk+assimilation
67867tween 40+hydrolysis53423
67867starch+hydrolysis28017
67867gelatin+hydrolysis5291
67867nitrate+reduction17632
67867cellulose-hydrolysis62968
67867tween 20-hydrolysis53424
67867tween 80-hydrolysis53426
67867esculin-hydrolysis4853
67867D-ribose+carbon source16988
67867L-arabinose+carbon source30849
67867D-glucose+carbon source17634
67867maltose+carbon source17306
67867D-galactose+carbon source12936
67867sucrose+carbon source17992
67867D-mannose+carbon source16024
67867lactose+carbon source17716
67867D-mannitol+carbon source16899
67867L-rhamnose+carbon source62345
67867D-sorbitol+carbon source17924
67867myo-inositol+carbon source17268
67867raffinose+carbon source16634
67867D-xylose-carbon source65327
67867D-fructose-carbon source15824
67867L-alanine-nitrogen source16977
67867L-arginine-nitrogen source16467
67867glycine-nitrogen source15428
67867L-asparagine+nitrogen source17196
67867L-aspartate+nitrogen source29991
67867creatine-nitrogen source16919
67867L-proline-nitrogen source17203
67867L-serine-nitrogen source17115
67867L-threonine-nitrogen source16857
67867L-tyrosine-nitrogen source17895
67867L-glutamate+nitrogen source29988

metabolite production

@refChebi-IDmetaboliteproduction
6786789634melaninno
6786716136hydrogen sulfideno

enzymes

@refvalueactivityec
67867catalase+1.11.1.6
67867urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    67867C17:09.5
    67867C18:01.6
    67867C14:0 iso3.4
    67867C15:0 iso6.9
    67867C16:0 iso13.1
    67867C17:0 iso3.1
    67867C15:0 anteiso23.1
    67867C17:0 anteiso17.2
    67867C17:1 w8c16.3
    67867C18:1 w9c2.3
    67867C16:1 iso G1.1
    67867C17:1 iso w9c0.3
    67867C15:0 2OH2.1
  • type of FA analysis: whole cell analysis
  • incubation medium: GY broth
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 7
  • library/peak naming table: Nist 14
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudehost speciesenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
65161soilcentral China, Henan province, Zhumadian (33° 5' 50.9'' N, 113° 57' 3'' E)ChinaCHNAsia33.0975113.951
67770Rhizosphere soil of wheat (Triticum aestivum L.) from ZhumadianHenan Province, Central ChinaChinaCHNAsiaTriticum aestivum
67867rhizosphere soil of wheat (Triticum aestivum L.)Zhumadian, Henan ProvinceChinaCHNAsia33.6333114.033dulcitol-proline agarsupplemented with cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1)28 days28

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 67770
  • description: Jiangella rhizosphaerae 16S ribosomal RNA gene, partial sequence
  • accession: MH144586
  • length: 1513
  • database: ena
  • NCBI tax ID: 2293569

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jiangella rhizosphaerae NEAU-YY2652839627365draftimg2293569
67867Jiangella rhizosphaerae NEAU-YY265GCA_003579925scaffoldncbi2293569

GC content

  • @ref: 67770
  • GC-content: 72.6
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: yes
  • confidence: 97
  • training_data: no

External links

@ref: 65161

culture collection no.: DSM 106774, CGMCC 4.7475, JCM 32551

straininfo link

  • @ref: 111280
  • straininfo: 405169

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30801239Jiangella rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of wheat (Triticum aestivum L.).Han C, Zhao J, Shi H, Tian Y, Zhang C, Guo X, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0033142019Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Triticum/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny32228773Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov.Saygin H, Ay H, Guven K, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0040112020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65161Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-106774Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 106774)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67867Chuanyu Han, Junwei Zhao, Haoran Shi, Yuanyuan Tian, Chen Zhang, Xiaowei Guo, Wensheng Xiang, Xiangjing WangJiangella rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of wheat (Triticum aestivum L.)10.1099/ijsem.0.003314IJSEM 69: 1320-1326 2019
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
111280Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405169.1