Strain identifier
BacDive ID: 158458
Type strain: 
Species: Barnesiella propionica
Strain Designation: E21
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; E21
NCBI tax ID(s): 2033407 (species)
General
@ref: 65134
BacDive-ID: 158458
DSM-Number: 107469
keywords: genome sequence, Bacteria, mesophilic
description: Barnesiella propionica E21 is a mesophilic bacterium that was isolated from human faeces.
NCBI tax id
- NCBI tax id: 2033407
- Matching level: species
strain history
- @ref: 65134
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; E21
doi: 10.13145/bacdive158458.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Barnesiellaceae
- genus: Barnesiella
- species: Barnesiella propionica
- full scientific name: Barnesiella propionica Hitch et al. 2022
@ref: 65134
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Barnesiellaceae
genus: Barnesiella
species: Barnesiella propionica
full scientific name: Barnesiella propionica Hitch et al. 2022
strain designation: E21
type strain: yes
Culture and growth conditions
culture medium
- @ref: 65134
- name: YCFA-MEDIUM (MODIFIED) (DSMZ Medium 1611)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1611
- composition: Name: YCFA MEDIUM (modified) (DSMZ Medium 1611) Composition: Casitone 10.0 g/l Glucose 5.0 g/l NaHCO3 4.0 g/l Yeast extract 2.5 g/l Acetic acid 1.78695 g/l L-Cysteine HCl 1.0 g/l NaCl 0.9 g/l Propionic acid 0.62559 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l CaCl2 x 2 H2O 0.09 g/l n-Valeric acid 0.08451 g/l iso-Valeric acid 0.0837899 g/l iso-Butyric acid 0.07695 g/l MgSO4 x 7 H2O 0.045 g/l Hemin 0.01 g/l Resazurin 0.001 g/l Pyridoxine hydrochloride 0.0001 g/l Nicotinic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l D-Calcium pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Lipoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 65134
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65134
- sample type: human faeces
- geographic location: Calgary
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 66792
- description: Barnesiella propionica E21
- accession: GCA_025567045
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2981781
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.539 | no |
| flagellated | no | 96.827 | no |
| gram-positive | no | 97.655 | no |
| anaerobic | yes | 98.639 | no |
| aerobic | no | 97.071 | no |
| halophile | no | 83.998 | no |
| spore-forming | no | 95.705 | no |
| glucose-ferment | yes | 54.777 | no |
| thermophile | no | 98.478 | no |
| glucose-util | yes | 86.584 | no |
External links
@ref: 65134
culture collection no.: DSM 107469, JCM 34805
straininfo link
- @ref: 111256
- straininfo: 399610
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65134 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107469 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107469) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111256 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399610.1 |