Strain identifier
BacDive ID: 158446
Type strain: 
Species: Prevotella phocaeensis
Strain history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; SN 19
NCBI tax ID(s): 1776388 (species)
version 8.1 (current version)
General
@ref: 65122
BacDive-ID: 158446
DSM-Number: 103364
keywords: 16S sequence, Bacteria, mesophilic
description: Prevotella phocaeensis DSM 103364 is a mesophilic bacterium that was isolated from stool specimen, 81-year-old woman.
NCBI tax id
- NCBI tax id: 1776388
- Matching level: species
strain history
- @ref: 65122
- history: <- S. Khelaifia, Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille; SN 19
doi: 10.13145/bacdive158446.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prevotellaceae
- genus: Prevotella
- species: Prevotella phocaeensis
- full scientific name: Prevotella phocaeensis Afouda et al. 2019
@ref: 65122
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prevotellaceae
genus: Prevotella
species: Prevotella phocaeensis
full scientific name: Prevotella phocaeensis Afouda et al. 2019
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65122 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
| 65122 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 65122
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 65122
- sample type: stool specimen, 81-year-old woman
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Female |
| #Infection | #Patient | #Specimen |
taxonmaps
- @ref: 69479
- File name: preview.99_1850.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16442;96_162;97_174;98_1464;99_1850&stattab=map
- Last taxonomy: Prevotella phocaeensis subclade
- 16S sequence: LN998069
- Sequence Identity:
- Total samples: 8281
- soil counts: 96
- aquatic counts: 69
- animal counts: 8074
- plant counts: 42
Sequence information
16S sequences
- @ref: 65122
- description: Prevotella sp. SN19 partial 16S rRNA gene, strain SN19
- accession: LN998069
- length: 1496
- database: ena
- NCBI tax ID: 1776388
External links
@ref: 65122
culture collection no.: DSM 103364, CSUR P2259, SN 19
straininfo link
- @ref: 111247
- straininfo: 400639
literature
- topic: Genetics
- Pubmed-ID: 28070336
- title: Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile.
- authors: Afouda P, Ndongo S, Khelaifia S, Labas N, Cadoret F, Di Pinto F, Delerce J, Raoult D, Million M
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2016.12.013
- year: 2016
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65122 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103364 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103364) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 111247 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400639.1 |