Strain identifier

BacDive ID: 158398

Type strain: No

Species: Corynebacterium gottingense

Strain Designation: NBT06-6, NBT06-06

Strain history: CIP <- 2018, Y. Wei, Shanghai Ocean Univ., Shanghai, China: strain NBT06-06

NCBI tax ID(s): 2026255 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 65074

BacDive-ID: 158398

DSM-Number: 105365

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Corynebacterium gottingense NBT06-6 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from deep sea water.

NCBI tax id

  • NCBI tax id: 2026255
  • Matching level: species

strain history

@refhistory
65074<- Y. Wei, Shanghai Ocean University., College of Marine Sciences, Shanghai, P.R. China; NBT06-6
119717CIP <- 2018, Y. Wei, Shanghai Ocean Univ., Shanghai, China: strain NBT06-06

doi: 10.13145/bacdive158398.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium gottingense
  • full scientific name: Corynebacterium gottingense Atasayar et al. 2017
  • synonyms

    @refsynonym
    20215Corynebacterium godavarianum
    20215Corynebacterium hadale

@ref: 65074

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Burkholderiales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium gottingense

full scientific name: Corynebacterium gottingense Atasayar et al. 2017

strain designation: NBT06-6, NBT06-06

type strain: no

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
65550positive1.3 µm0.57 µmrod-shapedno
119717positiveflask-shapedno

colony morphology

  • @ref: 65550
  • colony size: 1-2 mm
  • colony color: ivory-white
  • medium used: MA

multimedia

  • @ref: 65074
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_105365.jpg
  • caption: Medium 514 35°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
65074COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
65074BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
65550Marine agar (MA)yes
119717CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
65074positivegrowth37mesophilic
65074positivegrowth35mesophilic
65550positivegrowth22-41
65550positiveoptimum35mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 65550
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 65550
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
65550NaClpositivegrowth0-10 %(w/v)
65550NaClpositiveoptimum4 %(w/v)

observation

  • @ref: 65550
  • observation: optimal growth at 10 MPa

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
65550168082-dehydro-D-gluconate-builds acid from
65550581435-dehydro-D-gluconate+builds acid from
6555027613amygdalin-builds acid from
6555018305arbutin-builds acid from
6555071422beta-gentiobiose-builds acid from
6555017057cellobiose-builds acid from
6555015963ribitol+/-builds acid from
6555017108D-arabinose-builds acid from
6555018333D-arabitol+builds acid from
6555015824D-fructose+builds acid from
6555028847D-fucose-builds acid from
6555012936D-galactose-builds acid from
6555017634D-glucose+builds acid from
6555062318D-lyxose-builds acid from
6555016899D-mannitol+/-builds acid from
6555016024D-mannose+builds acid from
6555016988D-ribose+builds acid from
6555017924D-sorbitol-builds acid from
6555016443D-tagatose-builds acid from
6555065327D-xylose-builds acid from
6555016813galactitol-builds acid from
6555017113erythritol-builds acid from
655504853esculin-hydrolysis
6555024265gluconate-builds acid from
6555017754glycerol-builds acid from
6555028087glycogen-builds acid from
6555017268myo-inositol-builds acid from
6555015443inulin-builds acid from
6555030849L-arabinose-builds acid from
6555018403L-arabitol-builds acid from
6555018287L-fucose-builds acid from
6555062345L-rhamnose-builds acid from
6555017266L-sorbose-builds acid from
6555065328L-xylose-builds acid from
6555017716lactose-builds acid from
6555017306maltose+builds acid from
655506731melezitose-builds acid from
6555028053melibiose-builds acid from
65550320061methyl alpha-D-glucopyranoside-builds acid from
6555043943methyl alpha-D-mannoside-builds acid from
6555074863methyl beta-D-xylopyranoside-builds acid from
65550506227N-acetylglucosamine-builds acid from
6555017632nitrate-reduction
6555016634raffinose-builds acid from
6555017814salicin-builds acid from
6555028017starch-hydrolysis
6555017992sucrose-builds acid from
6555027082trehalose+builds acid from
6555032528turanose-builds acid from
6555016199urea-hydrolysis
6555017151xylitol-builds acid from

enzymes

@refvalueactivityec
65550catalase+1.11.1.6
65550cytochrome oxidase-1.9.3.1
65550pyrazinamidase+3.5.1.B15
65550alkaline phosphatase+3.1.3.1
65550esterase (C 4)+
65550esterase Lipase (C 8)+
65550leucine arylamidase+3.4.11.1
65550acid phosphatase+3.1.3.2
65550phosphoamidase+3.9.1.1
65550lipase (C 14)-
65550pyrrolidonyl arylamidase-3.4.19.3
65550valine aminopeptidase-
65550trypsin-3.4.21.4
65550alpha-galactosidase-3.2.1.22
65550beta-galactosidase-3.2.1.23
65550beta-glucuronidase-3.2.1.31
65550alpha-glucosidase-3.2.1.20
65550beta-glucosidase-3.2.1.21
65550N-acetyl-beta-glucosaminidase-3.2.1.52
65550alpha-mannosidase-3.2.1.24
65550alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudesampling dateenrichment cultureenrichment culture durationisolation date
65074deep sea waterNew Britain Trench, Papua New Guinean Exclusive Economic Zone (6° 21' 43.9'' S, 153° 49' 51.8'' E)Papua New GuineaPNGAustralia and Oceania-6.3622153.831
65550deep-sea waterNew Britain Trench-3.36153.832017-01-31MA3 days
119717Environment, Deep seawater sample collected at a depth of 8900 mNew Britain TrenchPapua New GuineaPNGAustralia and Oceania2017-01-31

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
650741Risk group (German classification)
1197172Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
65074Corynebacterium sp. NBT06-6 16S ribosomal RNA gene, partial sequenceMF5762601395ena2026255
65074Corynebacterium hadale strain NBT06-6, whole genome shotgun sequencing projectNQMQ0000000076ena2026255

GC content

  • @ref: 65550
  • GC-content: 65.1
  • method: genome sequence analysis

External links

@ref: 65074

culture collection no.: DSM 105365, MCCC 1K03347, CIP 111638

straininfo link

  • @ref: 111202
  • straininfo: 405766

literature

  • topic: Phylogeny
  • Pubmed-ID: 29557772
  • title: Corynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench.
  • authors: Wei Y, Fang J, Xu Y, Zhao W, Cao J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002695
  • year: 2018
  • mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Corynebacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Pacific Ocean, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65074Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105365Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105365)
65550Yuli Wei, Jiasong Fang, Yunping Xu, Weiqiang Zhao and Junwei CaoCorynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench10.1099/ijsem.0.002695IJSEM 68: 1474-1478 201829557772
111202Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405766.1
119717Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111638Collection of Institut Pasteur (CIP 111638)